View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_16 (Length: 507)

Name: NF6698_high_16
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_16
NF6698_high_16
[»] chr5 (1 HSPs)
chr5 (139-490)||(2638429-2638780)
[»] chr7 (4 HSPs)
chr7 (15-139)||(6944521-6944645)
chr7 (15-139)||(5268183-5268307)
chr7 (15-139)||(23059883-23060008)
chr7 (20-110)||(39183110-39183200)
[»] chr4 (2 HSPs)
chr4 (15-139)||(18302445-18302569)
chr4 (15-139)||(18032162-18032286)
[»] chr3 (1 HSPs)
chr3 (15-139)||(13234611-13234735)
[»] chr2 (4 HSPs)
chr2 (15-139)||(37874797-37874921)
chr2 (27-139)||(45194188-45194300)
chr2 (64-139)||(44511732-44511808)
chr2 (83-114)||(45195265-45195296)
[»] scaffold0002 (1 HSPs)
scaffold0002 (28-76)||(202952-203000)


Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 139 - 490
Target Start/End: Original strand, 2638429 - 2638780
Alignment:
Q  139 attcacttactactgaattggcaaatataatactattgttgcattaattaattcaaaatgacaattttgtggagtggaacttatgttttccaatcaaagt 238  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2638429 attcacttactactgaattggcaaatatagtactattgttgcattaattaattcaaaatgacaattttgtggagtggaacttatgttttccaatcaaagt 2638528  T
Q  239 tggtcaaataaattccaaggataaaggacggttaatcagtagtttgtgggatgtttacactctttttgttgtcaaacccttcattatttagcacacagca 338  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  2638529 tggtcaaataaattccaaggataaaggacggttaatcagtagtttgtgggatgtttacactctttttgttgtcaaacccttcattatttagcacacagga 2638628  T
Q  339 atgagcaatctcaatatttaaattcaagtagtagtaagtaggatagctataacttagcttcaattttaaaatacagttttaaatcttatcggcctataat 438  Q
    ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||| |||||||| ||||||||||||||||| ||||||    
T  2638629 atgagcaatctcaatatttaaattctagtagtagtaagtaggctacctataacttagcttcaatttcaaaatacaattttaaatcttatcggcttataat 2638728  T
Q  439 acacttagtagaaactaaaactcccacaacgcgacgaatcatagtttaaatt 490  Q
     || |||||| || |||||||||||||||||||| |||||||||||||||||    
T  2638729 gcatttagtaaaagctaaaactcccacaacgcgatgaatcatagtttaaatt 2638780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 109; Significance: 1e-54; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 6944521 - 6944645
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 114  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6944521 catctttcacccagtatcgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 6944620  T
Q  115 tttcaaaaagggaaaaatggaatga 139  Q
     | ||||||||||||||||||||||    
T  6944621 ctccaaaaagggaaaaatggaatga 6944645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 5268183 - 5268307
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 114  Q
    |||| |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  5268183 catctttcacccaatatcgaaggatttgaactaagatttccagatggataggatatggtattcatatatctgacacataatttaaatatgtaaatttatc 5268282  T
Q  115 tttcaaaaagggaaaaatggaatga 139  Q
     | ||||||||||||||||||||||    
T  5268283 ctccaaaaagggaaaaatggaatga 5268307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 139
Target Start/End: Original strand, 23059883 - 23060008
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtat-atctgacacataattgaaatatgtaaatttat 113  Q
    |||| |||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||||||||||    
T  23059883 catctttcaccgagtatcgaaggatttgaactaaaatttccagatggataggatatgatatttgtattatctgacacataattgaaatatgtaaatttat 23059982  T
Q  114 ctttcaaaaagggaaaaatggaatga 139  Q
    | | ||||||||||||||||||||||    
T  23059983 cctccaaaaagggaaaaatggaatga 23060008  T

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Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 39183110 - 39183200
Alignment:
Q  20 ttcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatt 110  Q
    ||||||| |||| |||||||||||||||| |||| |||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||    
T  39183110 ttcacccggtatcgaaggatttgaactaagattttcagatggataagatatagtattcgtatatctgacacataatttaaatatgtaaatt 39183200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 109; Significance: 1e-54; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 18302569 - 18302445
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 114  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18302569 catctttcacccagtatcgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 18302470  T
Q  115 tttcaaaaagggaaaaatggaatga 139  Q
     | ||||||||||||||||||||||    
T  18302469 ctccaaaaagggaaaaatggaatga 18302445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 18032286 - 18032162
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 114  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18032286 catctttcacccagtatcgaaggatttgaactaaaattttcagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 18032187  T
Q  115 tttcaaaaagggaaaaatggaatga 139  Q
     | ||||||||||||||||||||||    
T  18032186 ctccaaaaagggaaaaatggaatga 18032162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 13234735 - 13234611
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 114  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13234735 catctttcacccagtatcgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 13234636  T
Q  115 tttcaaaaagggaaaaatggaatga 139  Q
     | ||||||||||||||||||||||    
T  13234635 ctccaaaaagggaaaaatggaatga 13234611  T

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Target: chr2 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 15 - 139
Target Start/End: Complemental strand, 37874921 - 37874797
Alignment:
Q  15 catcattcacccagtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 114  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37874921 catctttcacccagtatcgaaggatttgaactaaaattttcagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatc 37874822  T
Q  115 tttcaaaaagggaaaaatggaatga 139  Q
     | ||||||||||||||||||||||    
T  37874821 ctccaaaaagggaaaaatggaatga 37874797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 27 - 139
Target Start/End: Complemental strand, 45194300 - 45194188
Alignment:
Q  27 agtattgaaggatttgaactaaaatttccagatggataggatatggtattcgtatatctgacacataattgaaatatgtaaatttatctttcaaaaaggg 126  Q
    ||||| ||||||||||||||||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |  |||||| |    
T  45194300 agtatcgaaggatttgaactaaaattttcatatagataggatatgatattcgtatatctgacacataattgaaatatgtaaatttatcctcaaaaaagag 45194201  T
Q  127 aaaaatggaatga 139  Q
    |||||||||||||    
T  45194200 aaaaatggaatga 45194188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 64 - 139
Target Start/End: Complemental strand, 44511808 - 44511732
Alignment:
Q  64 aggatatggtattcgtatatctgacacataa-ttgaaatatgtaaatttatctttcaaaaagggaaaaatggaatga 139  Q
    |||||||||||||||||| ||| |||||||| || |||||||||||||| || | |||||||| |||||| ||||||    
T  44511808 aggatatggtattcgtatgtctaacacataaatttaaatatgtaaatttgtcctccaaaaaggaaaaaatagaatga 44511732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 114
Target Start/End: Original strand, 45195265 - 45195296
Alignment:
Q  83 tctgacacataattgaaatatgtaaatttatc 114  Q
    ||||||||||||||||||||||||||||||||    
T  45195265 tctgacacataattgaaatatgtaaatttatc 45195296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 202952 - 203000
Alignment:
Q  28 gtattgaaggatttgaactaaaatttccagatggataggatatggtatt 76  Q
    ||||||||||| |||||| || ||||||| |||||||||||| ||||||    
T  202952 gtattgaaggagttgaaccaagatttccaaatggataggatagggtatt 203000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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