View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_18 (Length: 504)
Name: NF6698_high_18
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 37145528 - 37145044
Alignment:
| Q |
18 |
gtatgtatatttattttacggcaagttcttgttaggtccaaatttaatttctcttttttattgtttaggaaatattttacagctctacacacaaaacaga |
117 |
Q |
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| T |
37145528 |
gtatgtatatttattttacggcacgttgttgttaggtccaaatttaatttctcttttttattgtttaggaaatattttacagctctacacacaaaacaga |
37145429 |
T |
|
| Q |
118 |
acattttcagaaaattcactcaaagaccggggtgccatataactctatgctctttttcgatgatgataacaataacatgaaaccggtatctatcannnnn |
217 |
Q |
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| T |
37145428 |
acattttcagaaaattcactccaagaccggggtgccatataactctatgctctttttcgatgatgataacaataacatgaaaccggtatctatcatttta |
37145329 |
T |
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| Q |
218 |
nnnnnnnnnnnaattaattaagttctcaaattctcttatttgtttggaggagtgattatcaatttgtcatatcatgt----tgatttgttgttgcaataa |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
37145328 |
ttttgttttttaattaattaagttctcaaattctcttatttgtttggaggagtgattatcaatttgtcatatcatgtaacatgatttgttgttgcaataa |
37145229 |
T |
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| Q |
314 |
caggtttcaaatttgggagttacgagtattttggttagaaatggtttgaatctaggagtatttagagaagggctcacaagattttctcaaaactgggatg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37145228 |
caggtttcaaatttgggagttacgagtattttggttagaaatggtttgaatctaggagtatttagagaagggctcacaagattttctcaaaactgggatg |
37145129 |
T |
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| Q |
414 |
cctcaaagaacaagcagaaaaggcgcaagtaaatgttctcagaaagcatattcttccaaccttgatgcttgagattggatgtcca |
498 |
Q |
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| T |
37145128 |
cctcaaagaacaagcagaaaaggcgcaagtaaatgttctcagaaagcatattcttccaaccatgatgcttgagattggatgtcca |
37145044 |
T |
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