View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_20 (Length: 489)
Name: NF6698_high_20
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 15 - 473
Target Start/End: Original strand, 7720336 - 7720794
Alignment:
| Q |
15 |
agaatatgcattattgtaccctgcccgaagaataccaattttctttcctacatctaatttaatttctttaggcacatattatcgtcaagaatcacgttga |
114 |
Q |
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| T |
7720336 |
agaatatgcattattgtaccctgccccaagaataccaattttctttcctacatctaatttaatttctttaggcacatattatcgtcaagaatcacgttga |
7720435 |
T |
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| Q |
115 |
gttttcactctagatatttgtcaagaatgacattgagttttcagtttagaatttatgaactaacttttaaaagcattcttgtattatactactacgtact |
214 |
Q |
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| T |
7720436 |
gttttcactctagatatttgtcaagaatgacattgagttttcagtttagaatttatgaactaacttttaaaagcattcttgtattatactactacgtact |
7720535 |
T |
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| Q |
215 |
ggcatgacactgttctcgcataagcaactgctccaaaaaagcaaagttgtgatgggttttagattccaggcacgaggttactatcatgacgaacttggct |
314 |
Q |
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| T |
7720536 |
ggcatgacactgttctcgcataagcaactgctccaaaaaagcaaagttgtgatgggttttagattccaggcacgaggttactatcatgacgaacttggct |
7720635 |
T |
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| Q |
315 |
tagattcattcacgtgattcccattgtacgagtggccataggtagaagaaacaactggttgttgttgtgattgtttgttgctgctggattggatgcgatg |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7720636 |
tagattcattcacgtgattcccattgtacgagtggccataggtagaagaaacaactggttgttgttgtgattgtttgttgctgctggattggatgcgatg |
7720735 |
T |
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| Q |
415 |
gtctattataactactaacggaggggatgtttgaggagtggtcattgttatgttgaaat |
473 |
Q |
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| T |
7720736 |
gtctattataactactaacggaggggatgtttgaggagtggtcattgttatgttgaaat |
7720794 |
T |
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