View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6698_high_22 (Length: 475)
Name: NF6698_high_22
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_22 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 9 - 475
Target Start/End: Original strand, 11855277 - 11855735
Alignment:
| Q |
9 |
acatcatatttatgagtgactttttgacaataatgaaataatacacaagttagtctaagagaatcccctaatctaaatcccctaaattgtatactcgagt |
108 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
11855277 |
acatcgtatttatgagtgactttttgacaataatgaaataacacacaagttagtctaagagaatcccctaatctcaatcccctaaattgtatact----- |
11855371 |
T |
|
| Q |
109 |
actcgaccgtgtattctcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagaccggggtggtatactcgactgtgtattctcag |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
11855372 |
---cgaccgtgtattctcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagactggggtggtatactcgactgcgtattctcag |
11855468 |
T |
|
| Q |
209 |
aactagcagcctttgacgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaa |
308 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11855469 |
aactagcagccttcgacgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatatacaa |
11855568 |
T |
|
| Q |
309 |
gtcaatcccatacatgtcatcagcattagggtcagccggcttccaaatctcaacaggaggtgctaacacattcactacgtatcccatatcgggacgctga |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11855569 |
gtcaatcccatacatgtcatcagcattaggttcagccggcttccaaatctcaacaagaggtgctaacacattcactacgtatcccatatcgggacgctga |
11855668 |
T |
|
| Q |
409 |
tgaggctcccttgcacagcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcct |
475 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11855669 |
tgaggctcccttgcacagcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcct |
11855735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 125 - 475
Target Start/End: Complemental strand, 11838454 - 11838104
Alignment:
| Q |
125 |
tcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagaccggggtggtatactcgactgtgtattctcagaactagcagcctttga |
224 |
Q |
| |
|
||||| || ||| ||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
11838454 |
tcaaactttatcttgcatcattagatgtaaaggaatctgcaaatccaggagacctaggtggtatacttgactgtgtattctcacaactagcagccattga |
11838355 |
T |
|
| Q |
225 |
cgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatg |
324 |
Q |
| |
|
|||| |||||||||||| ||||||||||||||||||||| |||||||| ||||| || ||||||||||||||| ||| | ||||||||||||||| || |
|
|
| T |
11838354 |
cgaagtatacgaaacatcaagtgtgttgctcattccttcatgattctgccacttaatcagtgcttgaggcaaactcatatccaagtcaatcccatatata |
11838255 |
T |
|
| Q |
325 |
tcatcagcattagggtcagccggcttccaaatctcaacaggaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcac |
424 |
Q |
| |
|
|||||| ||| ||| |||||||||||||||||||| ||| | ||||||| |||||||||||||| |||||| || |||||||||| |||||||||||||| |
|
|
| T |
11838254 |
tcatcaacatcaggttcagccggcttccaaatctcgacaaggggtgctagcacattcactacgtgtcccatgtcaggacgctgattaggctcccttgcac |
11838155 |
T |
|
| Q |
425 |
agcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcct |
475 |
Q |
| |
|
| |||||||| |||||| ||| ||| |||||||||||||||||||||||| |
|
|
| T |
11838154 |
aacagtggctagccaatcctgcaatagtcctgaaactctccaagccttcct |
11838104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 125 - 475
Target Start/End: Complemental strand, 11851137 - 11850787
Alignment:
| Q |
125 |
tcaaaattcatcgtgcatcagaagatgtaaaggaatcaacaaatccaggagaccggggtggtatactcgactgtgtattctcagaactagcagcctttga |
224 |
Q |
| |
|
||||| ||||||| ||||||| ||||||||| |||| |||||||||||||||| || || ||||| |||||||||| |||| ||| ||||||| | || |
|
|
| T |
11851137 |
tcaaatttcatcgcgcatcagcagatgtaaaagaattggcaaatccaggagaccgaggagggatacttgactgtgtatactcacaaccagcagccatcga |
11851038 |
T |
|
| Q |
225 |
cgaacaatacgaaacatcgagtgtgttgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatg |
324 |
Q |
| |
|
||| | | ||||||||| |||||||||||| |||||||||||||| || ||||||| || ||||||| |||| || | ||||||||||||||||||| |
|
|
| T |
11851037 |
agaagatttcgaaacatcaagtgtgttgctcgttccttcaagattcggccacttactaagtccttgaggaaaacttatatccaagtcaatcccatacatg |
11850938 |
T |
|
| Q |
325 |
tcatcagcattagggtcagccggcttccaaatctcaacaggaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcac |
424 |
Q |
| |
|
|||||||| | ||| |||||||||||||||||||| ||| ||||||||| |||||||||||| | |||||| || ||||||||||||||||||||||||| |
|
|
| T |
11850937 |
tcatcagcttcaggttcagccggcttccaaatctcgacaagaggtgctagcacattcactacatgtcccatgtcaggacgctgatgaggctcccttgcac |
11850838 |
T |
|
| Q |
425 |
agcagtggcttgccaattctgaaatgatcctgaaactctccaagccttcct |
475 |
Q |
| |
|
| || |||||||||||| ||| || ||||||||||||||| |||||||| |
|
|
| T |
11850837 |
aacattggcttgccaatcctgccatagtcctgaaactctccaggccttcct |
11850787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 251 - 475
Target Start/End: Original strand, 27442121 - 27442345
Alignment:
| Q |
251 |
tgctcattccttcaagattctgcaacttactcggtgcttgaggcaaacccatgtacaagtcaatcccatacatgtcatcagcattagggtcagccggctt |
350 |
Q |
| |
|
|||||||||||||||| |||| | |||| ||| | ||| ||| |||| ||| |||||| || |||| ||||||||| |||| ||| ||||||||||| |
|
|
| T |
27442121 |
tgctcattccttcaaggttcttccacttgctcatttcttcaggtaaactcataggcaagtccataccatgcatgtcatcggcatcaggttcagccggctt |
27442220 |
T |
|
| Q |
351 |
ccaaatctcaacaggaggtgctaacacattcactacgtatcccatatcgggacgctgatgaggctcccttgcacagcagtggcttgccaattctgaaatg |
450 |
Q |
| |
|
||||||||||||| ||||||||| ||||| |||||||||| ||| |||||||||| || ||||||| || |||||||||| ||||||||||||| ||| |
|
|
| T |
27442221 |
ccaaatctcaacaagaggtgctagcacatggactacgtatcgcatgtcgggacgcttattaggctccttttcacagcagtgtcttgccaattctgcaata |
27442320 |
T |
|
| Q |
451 |
atcctgaaactctccaagccttcct |
475 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27442321 |
gtcctgaaactctccaagccttcct |
27442345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University