View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_27 (Length: 431)
Name: NF6698_high_27
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 42272794 - 42273171
Alignment:
| Q |
18 |
cataacctaccccaccaaactcaggaacatccctaaaggagactacccagttaaaagtggctgcagagtttgtgtgggacacttagtgaatccatatgcg |
117 |
Q |
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| T |
42272794 |
cataacctaccccaccaaactcaggaacatccctaaaggagactacccagttaaaagtggctgcagagtttgtgtgggacacttagtgaatccatatgcg |
42272893 |
T |
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| Q |
118 |
aagacttgtgcggaatattcttccacgcagcctaacttgtgtaagaaaggcgtttactgtccttcttcttacatctattgtgatcaaagaac-nnnnnnn |
216 |
Q |
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| T |
42272894 |
aagacttgtgcggaatattcttccacgcagcctaacttgtgtaagaaaggcgtttactgtccttcttcttacatctattgtgatcaaagaacaaaaaaaa |
42272993 |
T |
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| Q |
217 |
nttatggcatttgcttctagtttaccccaacaatcgttgttggcaaaatgagtcattatatggctggtgcaggtgctggtgctgctatccatgttttgta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42272994 |
attatggcatttgcttctagtttaccccaacaatcgttgttggcaaaatgagtcattttatggctggtgcaggtgctggtgctgctatccatgttttgta |
42273093 |
T |
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| Q |
317 |
tgatatcatggagcatttgacataagaggaatgtcaaactgtgggatgataaataatgctatagtgattaggaatata |
394 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42273094 |
tgatatcatggagcgtttgacataagaggaatgtcaaactttgggatgataaataatgctatagtgattaggaatata |
42273171 |
T |
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