View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_3 (Length: 751)

Name: NF6698_high_3
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_3
NF6698_high_3
[»] chr7 (1 HSPs)
chr7 (23-734)||(44693662-44694388)


Alignment Details
Target: chr7 (Bit Score: 595; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 23 - 734
Target Start/End: Original strand, 44693662 - 44694388
Alignment:
Q  23 aagggacaatttcccaaaatgataggaatacaaacgagaaacacacgctggttttgtgtttcacgtacacgtcactaatttcagccatgcagttgctgca 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44693662 aagggacaatttcccaaaatgataggaatacaaacgagaaacacacgctggttttgtgtttcacgtacacgtcactaatttcagccatgcagttgctgca 44693761  T
Q  123 cgtggcacttccttgaaatcacgtgctttcctacgaaaccttgaaaacgaaacgagagatttgcactaacaagcacgtgcaataatcacttaagtatttt 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||    
T  44693762 cgtggcacttccttgaaatcacgtgctttcctacgaaaccttgaaaacgaaacgagagatttgcactaacaagcacgtgcaataatcactta----tttt 44693857  T
Q  223 aaaacatttcttccccagaaaagtaaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccaccaccctgagattat----- 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||         
T  44693858 aaaacatttcttccccagaaaagtaaaatttctttcagaattcgaaattgaaactacttacgctatcagcatcaccaccacc---ctgagattatcacag 44693954  T
Q  318 --------------atcaatttaactatctgtttagttcaaagattccataaccatattcatataatctttaaaaacaatggatactttgtgtttattac 403  Q
                  ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||    
T  44693955 aacataatcgttatatcaatttaactatctgtttagttcaaagattccataaccatattcatacaatctttaaaaacaatggttactttgtgtttattac 44694054  T
Q  404 aaagtgggattcctggtatagttcctttaatcacttctattactgcaaccactactacttcacgtgccaatgatcacgttcacgtgcatcaatctcacgt 503  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44694055 aaagtgggattcctggtatagttcctttaatcacttctattagtgcaactactactacttcacgtgccaatgatcacgttcacgtgcatcaatctcacgt 44694154  T
Q  504 aaccacagtgaggcgatcaaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgcctt---gcagtcaacgacgcctttacc 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| |||    
T  44694155 aaccacagtgaggcgatcaaacaagtcctccatgttttccagattcataggtagctccgccagaaacaattgccttgcagcagtcaacgacgccttcacc 44694254  T
Q  601 gcggagaatgcagacagagctgtgaaagaaggagatggacaaaatgggaactgggttttcaaggtttttgatcttaattctgtttggaaaggtgaacaag 700  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  44694255 gcggagaatgcagacagaactgtgaaagaaggagatggacaaaatgggaactgggttttcaaggtttttgatcttaattctgtttggaaaggggaacaag 44694354  T
Q  701 agagtggtgataacgacgaagatgaatgtgatgt 734  Q
    |||||||||||||||||| |||||||||||||||    
T  44694355 agagtggtgataacgacggagatgaatgtgatgt 44694388  T

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