View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_33 (Length: 405)
Name: NF6698_high_33
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_33 |
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Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 7 - 389
Target Start/End: Complemental strand, 34835853 - 34835471
Alignment:
| Q |
7 |
gttggggcgtgaaatttacaagcttgccactgactcgtgtcgagtagttgtggtttatctaggaaaaggtgataatgtgagaacaagactccaatgttat |
106 |
Q |
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| T |
34835853 |
gttggggcgtgaaatttacaagctttccactgactcgtgtcgagtagttgtggtttatctaggaaaaggtgataatgtgagaacaagactccaatgttat |
34835754 |
T |
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| Q |
107 |
ggtagaaatggtgctcatttgggtaatggttgttcttcatttgaatcttctaaccaaaagggacactcattgtttcatgaaatctttcttcaaggtttcc |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34835753 |
ggtagaaatggtgctcatttgggtaatggttgttcttcatttgaatcttctcaccaaaagggacactcattgtttcatgaaatctttcttcaaggtttcc |
34835654 |
T |
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| Q |
207 |
caattgtttatagatgggcttctgtaagtacatttcatgctttacacnnnnnnncttcaatttattaagatcaagatgatttcaattgattcatttgttg |
306 |
Q |
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| T |
34835653 |
caattgtttatagatgggcttctgtaagtacatttcatgctttacactttttttcttcaatttattaagatcaagatgatttcaattgattcatttgttg |
34835554 |
T |
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| Q |
307 |
aacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaat |
389 |
Q |
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| T |
34835553 |
aacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaattaat |
34835471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 171 - 246
Target Start/End: Complemental strand, 34821447 - 34821372
Alignment:
| Q |
171 |
actcattgtttcatgaaatctttcttcaaggtttcccaattgtttatagatgggcttctgtaagtacatttcatgc |
246 |
Q |
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| T |
34821447 |
actcattgtttcatgagatcatttttcaagggttcccaattgtttatagatgggcttctgtaagtacacttcatgc |
34821372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 239
Target Start/End: Original strand, 35335304 - 35335534
Alignment:
| Q |
9 |
tggggcgtgaaatttacaagcttgccactgactcgtgtcgagtagttgtggtttatctaggaaaaggtgataatgtgagaacaagactccaatgttatgg |
108 |
Q |
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|||| |||||||||||||||||| |||||||| | |||| ||||||||||||| || ||||||| ||| ||||||||| |||||||||| ||||||| |
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| T |
35335304 |
tgggccgtgaaatttacaagctttccactgaccctcgtcgtatagttgtggtttaccttggaaaagctgacaatgtgagagcaagactccagcgttatgg |
35335403 |
T |
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| Q |
109 |
tagaaatggtgctcatttgggtaatggttgttcttcatttgaatcttctaaccaaaagggacactcattgtttcatgaaatctttcttcaaggtttccca |
208 |
Q |
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| T |
35335404 |
caggaatggagctcatttgagtaacacttgtatgtcagatgactcttctctgcgaacgggaaggtcattgtttcaggagatattttcacaaggcttccca |
35335503 |
T |
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| Q |
209 |
attgtttatagatgggcttctgtaagtacat |
239 |
Q |
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| T |
35335504 |
attgtttatagatgggctcctgtaagtacat |
35335534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 385
Target Start/End: Original strand, 35336285 - 35336366
Alignment:
| Q |
304 |
ttgaacagatgcagaccaagggagatgctttgcaaacagaatctcaactgctgagtacatttgattatgcttggaacacaat |
385 |
Q |
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||||||||||||| | |||||||||| || ||||||||| || ||||| ||||||||||||||||| ||||||||||| |
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| T |
35336285 |
ttgaacagatgcaaaatgagggagatgccctgagaacagaatcacagctgcttagtacatttgattatgcatggaacacaat |
35336366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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