View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_36 (Length: 392)
Name: NF6698_high_36
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_36 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 6 - 375
Target Start/End: Complemental strand, 513974 - 513611
Alignment:
| Q |
6 |
agatagattttaaggttagggaatttagaaattatatattttttaatgacaatttagactttatttgaacagtggtgcattgtggctaatggttttgggt |
105 |
Q |
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| T |
513974 |
agatagattttaaggttagggaatttagaaattatac-ttttttaatgacaatttagactttatttgaacagtggtgcattgtggctaatggttttgggt |
513876 |
T |
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| Q |
106 |
ttaatcttgtattctataatttatcgcatattgcaactgatcaatattacattcttaccattttttatttgtatatcgtaggttaattgggatgaatttc |
205 |
Q |
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| T |
513875 |
ttaatcttgtattctataatttatcacatattgcaactgatcaa-----cattcttaccattttttatttgaatatcttaggttaattgggatgaatttc |
513781 |
T |
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| Q |
206 |
aagtctcgcaaattccaagacgtgtcaacccgtggtgggttgagcttatttctcacaaacctgctccgacgccattcccccaaacnnnnnnntttagaac |
305 |
Q |
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| T |
513780 |
aagtctcgcaaattccaagacgtgtcaacccgtggtgggttgagcttatttctcacaaacctgctccgacgccattcccccaaacaaaaaaatttagaac |
513681 |
T |
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| Q |
306 |
tactcaaagttctgcccaactaagtgataaaaaggaaacattattgaatgatgatggttttcctgttgat |
375 |
Q |
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| T |
513680 |
tactcaaagttctgcccaactaagtgataaaaaggaaacattattgaatggtgatggttttcctgttgat |
513611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 12 - 375
Target Start/End: Original strand, 563167 - 563526
Alignment:
| Q |
12 |
attttaaggttagggaatttagaaattatatattttttaatgacaatttagactttatttgaacagtggtgcattgtggctaatggttttgggtttaatc |
111 |
Q |
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| T |
563167 |
attttaaggttagggaatttataaattatacattttttaatgacaatttaaactttatttgaacaatggtgcactctggctaatggttttgggtttaatc |
563266 |
T |
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| Q |
112 |
ttgtattctataatttatcgcatattgcaactgatcaatattacattcttaccattttttatttg--tatatcgtaggttaattgggatgaatttcaagt |
209 |
Q |
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| T |
563267 |
ttgtattcaataatttatcacatattgcaaatgatcaatattgtattcttaccattttttatttgaatacatcataggttaattgggatgaatttcaaat |
563366 |
T |
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| Q |
210 |
ctcgcaaattccaagacgtgtcaacccgtggtgggttgagcttatttctcacaaacctgctccgacgccattcccccaaacnnnnnnntttagaactact |
309 |
Q |
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| T |
563367 |
ctcgcaaatttcaagacgagtcagcccgtggtgcgttgagct------tcacaaacctgctccgacgccattcccccaaacaaaaaaatttagaactact |
563460 |
T |
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| Q |
310 |
caaagttctgcccaactaagtgataaaaaggaaacattattgaatgatgatggttttcctgttgat |
375 |
Q |
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| T |
563461 |
caaagttctgcccaactaagtgataaaaaggaaacattattgaatgatgatggttttcctgttgat |
563526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 566608 - 566687
Alignment:
| Q |
178 |
atatcgtaggttaattgggatgaatttcaagtctcgcaaattccaagacgtgtcaacccgtggtgggttgagcttatttc |
257 |
Q |
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||||| |||||||| |||||||||||||||||||| |||||||||||||| ||| |||||||||||| |||||||| |
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| T |
566608 |
atatcataggttaactgggatgaatttcaagtctcacaaattccaagacgagtcggtatgtggtgggttgaacttatttc |
566687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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