View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_37 (Length: 389)
Name: NF6698_high_37
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_37 |
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Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Original strand, 1989426 - 1989805
Alignment:
| Q |
10 |
aatatgaacttgttcgtttagcatgttgtcctgaccatgttcttcataaccttgctattagggtaaagacccatttgggtatgaacctatctaccccttc |
109 |
Q |
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| T |
1989426 |
aatatgaacttgttcgtttagcatgttgtcctgaccatgttcttcataaccttgctattagggtaaagacccatttgggtatgaacctatctaccccttc |
1989525 |
T |
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| Q |
110 |
ttcaccttcacctcttaaccctattggaagaatcacttcatcttccaataaccctttttcaaaatcttctcctagaggaagtaatgggtttgacttcaat |
209 |
Q |
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| T |
1989526 |
ttcaccttcacctcttaaccctattggaagaatcacttcatcttccaataaccctttttcaaaatcttctcctagaggaagtaatgggtttgacttcaat |
1989625 |
T |
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| Q |
210 |
aggaacccttcatcaccttctggtaatgtttggtcacaaccctcttttccaaagaaccctattagtccaaagtttaatcctttaatgtcttatgagaata |
309 |
Q |
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| T |
1989626 |
aggaacccttcatcaccttctggtaatgtttggtcacaaccctctttcccaaagaaccctattagtccaaagtttaatcctttaatgtcttatgagaata |
1989725 |
T |
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| Q |
310 |
tccaaggtggtgt---------------tggcggcggcagtggtgctggtggttcctgtgctttttcaccaagggttaat |
374 |
Q |
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| T |
1989726 |
tccaaggtggtgttggtgttgttggtggtggcggcggcagtggtgctggtggttcctgtgctttttcaccaagggttaat |
1989805 |
T |
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