View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_46 (Length: 317)

Name: NF6698_high_46
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_46
NF6698_high_46
[»] chr4 (22 HSPs)
chr4 (3-205)||(3146043-3146245)
chr4 (244-282)||(7037493-7037531)
chr4 (244-306)||(44368187-44368249)
chr4 (244-306)||(51377278-51377340)
chr4 (242-282)||(4100764-4100804)
chr4 (244-282)||(3223013-3223051)
chr4 (244-282)||(5208336-5208374)
chr4 (244-306)||(27001394-27001456)
chr4 (225-282)||(42815409-42815467)
chr4 (225-282)||(925071-925128)
chr4 (244-277)||(1796390-1796423)
chr4 (242-307)||(45521563-45521628)
chr4 (225-285)||(52430882-52430943)
chr4 (242-282)||(56557755-56557796)
chr4 (242-289)||(2401632-2401680)
chr4 (238-282)||(8455879-8455923)
chr4 (244-280)||(9032804-9032840)
chr4 (242-285)||(14443220-14443264)
chr4 (238-282)||(25936258-25936302)
chr4 (244-296)||(34116535-34116587)
chr4 (216-288)||(39449169-39449240)
chr4 (230-281)||(48649528-48649580)
[»] chr5 (20 HSPs)
chr5 (225-296)||(582862-582933)
chr5 (244-306)||(30574362-30574424)
chr5 (244-307)||(3263492-3263555)
chr5 (244-307)||(9594502-9594565)
chr5 (244-306)||(4954490-4954552)
chr5 (244-306)||(15622068-15622130)
chr5 (244-306)||(38010896-38010958)
chr5 (242-289)||(8920100-8920148)
chr5 (242-305)||(21922130-21922194)
chr5 (242-282)||(27440501-27440541)
chr5 (244-306)||(9596799-9596861)
chr5 (244-282)||(9599737-9599775)
chr5 (244-306)||(11464108-11464169)
chr5 (244-306)||(12401216-12401278)
chr5 (246-296)||(32634734-32634784)
chr5 (241-285)||(24329988-24330032)
chr5 (242-282)||(26685505-26685545)
chr5 (242-282)||(26955236-26955276)
chr5 (242-306)||(28501639-28501703)
chr5 (242-289)||(41173274-41173322)
[»] scaffold0002 (1 HSPs)
scaffold0002 (244-306)||(147241-147303)
[»] chr7 (21 HSPs)
chr7 (244-306)||(30864402-30864464)
chr7 (225-306)||(33050188-33050269)
chr7 (244-296)||(37325814-37325866)
chr7 (244-306)||(19880216-19880278)
chr7 (225-303)||(37385221-37385299)
chr7 (225-306)||(2347044-2347125)
chr7 (225-306)||(4971295-4971376)
chr7 (241-306)||(43255552-43255617)
chr7 (225-305)||(26153651-26153730)
chr7 (225-296)||(116636-116707)
chr7 (244-307)||(29162263-29162326)
chr7 (244-306)||(27164822-27164884)
chr7 (242-296)||(30402170-30402224)
chr7 (225-282)||(28548230-28548287)
chr7 (242-282)||(33180718-33180759)
chr7 (225-282)||(37969936-37969993)
chr7 (225-306)||(39533370-39533451)
chr7 (242-307)||(44175567-44175632)
chr7 (225-285)||(29763835-29763895)
chr7 (242-289)||(37899345-37899393)
chr7 (242-282)||(44511161-44511201)
[»] chr3 (23 HSPs)
chr3 (244-306)||(13159685-13159747)
chr3 (244-306)||(36818980-36819042)
chr3 (225-306)||(8254032-8254113)
chr3 (225-306)||(11327113-11327194)
chr3 (225-282)||(38944150-38944207)
chr3 (244-306)||(3958003-3958065)
chr3 (225-282)||(44855256-44855313)
chr3 (225-306)||(46344419-46344500)
chr3 (245-306)||(50879620-50879681)
chr3 (244-296)||(32931913-32931965)
chr3 (225-285)||(48944716-48944776)
chr3 (225-280)||(50559222-50559278)
chr3 (244-303)||(40558988-40559047)
chr3 (225-282)||(6178434-6178491)
chr3 (225-295)||(7867707-7867777)
chr3 (244-306)||(20714267-20714329)
chr3 (244-282)||(30400165-30400203)
chr3 (225-306)||(49196701-49196782)
chr3 (244-306)||(53102887-53102949)
chr3 (242-307)||(29525255-29525320)
chr3 (225-282)||(38471647-38471704)
chr3 (238-295)||(45150262-45150319)
chr3 (242-306)||(7199-7263)
[»] chr8 (16 HSPs)
chr8 (225-306)||(41293706-41293787)
chr8 (242-306)||(36064052-36064116)
chr8 (244-307)||(30927915-30927978)
chr8 (244-306)||(41273539-41273601)
chr8 (242-282)||(9549207-9549248)
chr8 (225-282)||(14228712-14228769)
chr8 (242-289)||(3946262-3946310)
chr8 (244-284)||(6746056-6746096)
chr8 (242-285)||(12735017-12735061)
chr8 (244-306)||(1065441-1065503)
chr8 (244-282)||(32185670-32185708)
chr8 (240-282)||(40380301-40380343)
chr8 (240-288)||(18651390-18651439)
chr8 (252-285)||(37784380-37784413)
chr8 (244-284)||(6656352-6656392)
chr8 (244-284)||(6736754-6736794)
[»] chr2 (20 HSPs)
chr2 (242-306)||(36383484-36383548)
chr2 (225-280)||(20974358-20974413)
chr2 (225-308)||(35171209-35171292)
chr2 (244-306)||(3196072-3196134)
chr2 (244-306)||(10687965-10688027)
chr2 (244-305)||(27307217-27307278)
chr2 (238-307)||(30487428-30487497)
chr2 (242-285)||(14233724-14233768)
chr2 (238-288)||(14255320-14255371)
chr2 (244-306)||(34144536-34144598)
chr2 (244-306)||(38246736-38246798)
chr2 (225-282)||(3091746-3091803)
chr2 (225-306)||(6884915-6884996)
chr2 (238-282)||(14876975-14877020)
chr2 (242-295)||(28165151-28165204)
chr2 (225-306)||(29168730-29168811)
chr2 (255-288)||(43076334-43076367)
chr2 (248-285)||(44059731-44059768)
chr2 (225-306)||(44484641-44484722)
chr2 (242-306)||(38795382-38795446)
[»] chr1 (16 HSPs)
chr1 (238-306)||(50145786-50145854)
chr1 (244-306)||(3291410-3291472)
chr1 (225-282)||(18610778-18610835)
chr1 (225-306)||(42256465-42256546)
chr1 (225-296)||(7371943-7372014)
chr1 (242-285)||(49645384-49645427)
chr1 (240-282)||(7078509-7078551)
chr1 (244-306)||(13813582-13813644)
chr1 (244-282)||(25130727-25130765)
chr1 (244-306)||(25995484-25995546)
chr1 (216-306)||(29489344-29489434)
chr1 (214-306)||(6829770-6829860)
chr1 (242-279)||(35972816-35972853)
chr1 (242-282)||(11097893-11097933)
chr1 (242-282)||(19651432-19651472)
chr1 (241-285)||(21854470-21854514)
[»] scaffold0514 (1 HSPs)
scaffold0514 (244-306)||(1481-1543)
[»] chr6 (8 HSPs)
chr6 (244-306)||(3660338-3660400)
chr6 (225-282)||(3339508-3339565)
chr6 (238-282)||(34442071-34442116)
chr6 (244-306)||(2056807-2056869)
chr6 (225-306)||(27334863-27334944)
chr6 (225-306)||(27395603-27395684)
chr6 (250-306)||(27175987-27176043)
chr6 (238-285)||(31869085-31869132)
[»] scaffold0065 (1 HSPs)
scaffold0065 (241-280)||(38994-39033)
[»] scaffold0011 (1 HSPs)
scaffold0011 (244-306)||(18619-18681)
[»] scaffold0004 (1 HSPs)
scaffold0004 (244-306)||(249127-249189)
[»] scaffold0241 (1 HSPs)
scaffold0241 (243-295)||(5252-5304)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 3 - 205
Target Start/End: Original strand, 3146043 - 3146245
Alignment:
Q  3 gaagaatatttaccatttctgaagattggaaagtggttaggttttggtttagaaaagtggatttgaagaaacctaaagagaggtttcagggaatagtgaa 102  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3146043 gaagaaaatttaccatttctgaagattggaaagtggttaggttttggtttagaaaagtggatttgaagaaacctaaagagaggtttcagagaatagtgaa 3146142  T
Q  103 aatgttgagatcgatggggaagaaagagagtgtgtgtgatgatttgcagttaaggggttggtttacgataatgccattgagaagggacagtgagtcatca 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  3146143 aatgttgagatcgatggggaagaaagagagtgtgtgtgatgatttgcagttaaggtgttggtttacgataatgccattgagaagggacagtgagtcatca 3146242  T
Q  203 cac 205  Q
    |||    
T  3146243 cac 3146245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 7037531 - 7037493
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  7037531 tttgtgacaacttttgtacaattttctctctcatactca 7037493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 44368249 - 44368187
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||||||||| ||||||| || || ||||||| |||||||||    
T  44368249 tttgtgacaacttttgtacaactttctctcttatactcacatgatggtcttatcatctctctt 44368187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 51377340 - 51377278
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  51377340 tttgtgacaacttttgtccaactttctctctcatactcacatgatggtcttatcctctctctt 51377278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 4100804 - 4100764
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  4100804 attttgtgacaccttttgtacaattttctctctcatactca 4100764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 3223013 - 3223051
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  3223013 tttgtgacaacttttgtacaactttctctctcatactca 3223051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 5208374 - 5208336
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  5208374 tttgtgacaacttttgtacaactttctctctcatactca 5208336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 27001456 - 27001394
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  27001456 tttgtgacaacttctgtacaactttctctctcatactcacatgatggtcttatcctctctctt 27001394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 42815409 - 42815467
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    |||| |||| || ||||||||||| |||||||||||| ||| |||||||||||||||||    
T  42815409 atgatatttgtacaactattttgtaacaacttttgtgacaactttctctctcatactca 42815467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 925128 - 925071
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||| |||||||||||||||||   |||||||||||||||||||||    
T  925128 atgatatttatacaaccattttgtgacaacttttagacaattttctctctcatactca 925071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 1796390 - 1796423
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcat 277  Q
    ||||||||||||||||| ||||||||||||||||    
T  1796390 tttgtgacaacttttgtacaattttctctctcat 1796423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Complemental strand, 45521628 - 45521563
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    ||||| ||||||||||||| |||  ||||||||||||||||||| ||  ||||||  |||||||||    
T  45521628 attttatgacaacttttgtacaaccttctctctcatactcatattatcttcttattctctctcttt 45521563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 52430882 - 52430943
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtg-caattttctctctcatactcatat 285  Q
    |||| |||| || ||||||||| ||||||||||| || |||||||||||||| |||||||||    
T  52430882 atgatatttgtacaactattttatgacaacttttatgacaattttctctctcgtactcatat 52430943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 56557755 - 56557796
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    ||||| |||||||||||||| |||||||||||||||||||||    
T  56557755 attttatgacaacttttgtgacaattttctctctcatactca 56557796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 2401632 - 2401680
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatatcata 289  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| ||||||    
T  2401632 attttgtgacaacttttgtgacaactttatctctcatactcacatcata 2401680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 8455879 - 8455923
Alignment:
Q  238 aactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||||||  ||| ||||||||| |||||||    
T  8455879 aactattttgtgacaacttttgaacaactttctctctaatactca 8455923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 280
Target Start/End: Original strand, 9032804 - 9032840
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatact 280  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  9032804 tttgtgacaacttttgtacaactttctctctcatact 9032840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 14443220 - 14443264
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatat 285  Q
    ||||| |||||||||||||| ||||||||||||||||||| ||||    
T  14443220 attttttgacaacttttgtgacaattttctctctcatacttatat 14443264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 25936258 - 25936302
Alignment:
Q  238 aactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||| ||||||||||||  ||| |||||||||||||||||    
T  25936258 aactattttttgacaacttttgcacaactttctctctcatactca 25936302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 34116587 - 34116535
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    |||||||||||||||   ||||||||||||||||||||| || ||| ||||||    
T  34116587 tttgtgacaactttttgacaattttctctctcatactcacattatactcttat 34116535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 39449169 - 39449240
Alignment:
Q  216 ttaacagatatgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcat 288  Q
    |||| ||| |||| |||| || ||||||||||||| ||||||||  ||||||| ||||||||||||| |||||    
T  39449169 ttaagagaaatgatatttatacaactattttgtgataacttttg-acaattttttctctcatactcacatcat 39449240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 48649528 - 48649580
Alignment:
Q  230 atttttaaaactattttgtgacaacttttgtg-caattttctctctcatactc 281  Q
    ||||||| ||| ||||| | |||||||||||| ||||||||||||||||||||    
T  48649528 atttttacaaccattttctaacaacttttgtgacaattttctctctcatactc 48649580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 582933 - 582862
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    |||| ||||||| ||||||||||||| |||||||   |||||||||||||||||||||||| ||| ||||||    
T  582933 atgatatttttacaactattttgtgataacttttaaacaattttctctctcatactcatattatattcttat 582862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 30574424 - 30574362
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||||||||||||||||| || || ||||||| |||||||||    
T  30574424 tttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcatctctctt 30574362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 3263555 - 3263492
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    ||||||||||||||||| ||||||| ||||||||||||| || || |||||||  |||||||||    
T  3263555 tttgtgacaacttttgtacaattttttctctcatactcacatgatggtcttatcctctctcttt 3263492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 307
Target Start/End: Original strand, 9594502 - 9594565
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    ||||||||||||||||| ||| ||||||||||||||||| || || |||||||  |||||||||    
T  9594502 tttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctcttt 9594565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 4954490 - 4954552
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||| ||| |||||||||||||||||||| || |||||||  ||||||||    
T  4954490 tttgtgacaacttatgtacaactttctctctcatactcatatgatggtcttatcctctctctt 4954552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 15622068 - 15622130
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||| ||| |||||||||||||||||||| || |||||||  ||||||||    
T  15622068 tttgtgacaacttctgtacaactttctctctcatactcatatgatggtcttatcctctctctt 15622130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 38010896 - 38010958
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||| ||||||||| ||||||||||||||||||||| || || |||||||  ||||||||    
T  38010896 tttgtgataacttttgtacaattttctctctcatactcacatgatggtcttatcctctctctt 38010958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 8920100 - 8920148
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatatcata 289  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  8920100 attttgtgacaacttttgtgacaactttctctctcatactcacatcata 8920148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 305
Target Start/End: Complemental strand, 21922194 - 21922130
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatatcatagtcttataatctctct 305  Q
    ||||||||||||| |||||| ||| ||||||||||||||||| |||||| ||||||  |||||||    
T  21922194 attttgtgacaacgtttgtgacaactttctctctcatactcacatcatattcttattttctctct 21922130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 27440501 - 27440541
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||  |||||||||||||||||||||    
T  27440501 attttgtgacaacttttgaacaattttctctctcatactca 27440541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 9596861 - 9596799
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||| ||||||||||||| || || |||||||  ||||||||    
T  9596861 tttgtgacaacttttgtacaactttgtctctcatactcacatgatggtcttatcctctctctt 9596799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 9599775 - 9599737
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  9599775 tttgtgacaacttttgtacaactttctctctcatactca 9599737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 11464169 - 11464108
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||| ||||||||| ||||||||| ||||||||||| || || ||||||| |||||||||    
T  11464169 tttgtgataacttttgtacaattttctttctcatactcacatgat-gtcttatcatctctctt 11464108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 12401216 - 12401278
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||| ||||||||| | ||| ||||||||||||||||| || || ||||||| |||||||||    
T  12401216 tttgtaacaacttttttacaactttctctctcatactcacattatggtcttattatctctctt 12401278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 296
Target Start/End: Original strand, 32634734 - 32634784
Alignment:
Q  246 tgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    ||||||||||||||| ||| ||||||||||||||||| || || |||||||    
T  32634734 tgtgacaacttttgtacaactttctctctcatactcacatgatggtcttat 32634784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 24330032 - 24329988
Alignment:
Q  241 tattttgtgacaacttttgtgcaattttctctctcatactcatat 285  Q
    |||||||  ||||||||||| ||| ||||||||||||||||||||    
T  24330032 tattttggtacaacttttgtacaactttctctctcatactcatat 24329988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 26685545 - 26685505
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  26685545 attttgtgacaacttttgaataattttctctctcatactca 26685505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 26955276 - 26955236
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  26955276 attttgtgacaacttttgaataattttctctctcatactca 26955236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 28501639 - 28501703
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||||||||| |||||| ||| ||||||||||||| ||| || ||  |||||| |||||||||    
T  28501639 attttgtgacaatttttgtacaactttctctctcatattcacatgatgttcttatcatctctctt 28501703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 41173274 - 41173322
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatatcata 289  Q
    |||||||||||||||||||  ||| ||||||||||||||||| ||||||    
T  41173274 attttgtgacaacttttgtaacaactttctctctcatactcacatcata 41173322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 147303 - 147241
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| |||||||||||||||||||| || |||||||  ||||||||    
T  147303 tttgtgacaacttttgtacaactttctctctcatactcatatgatggtcttatcgtctctctt 147241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 30864464 - 30864402
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| |||||||||||||||||||| || |||||||  ||||||||    
T  30864464 tttgtgacaacttttgtacaactttctctctcatactcatatgatggtcttatcctctctctt 30864402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 33050188 - 33050269
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| ||||||||||||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  33050188 atgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctctt 33050269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 37325866 - 37325814
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    ||||||||||||||||| ||||||||||| ||||||||| || ||||||||||    
T  37325866 tttgtgacaacttttgtacaattttctctttcatactcacatgatagtcttat 37325814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 19880278 - 19880216
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||| ||||| |||||||||| ||||||||||  ||||||||    
T  19880278 tttgtgacaacttttgtacaactttatctctaatactcatatgatagtcttatcctctctctt 19880216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 303
Target Start/End: Complemental strand, 37385299 - 37385221
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctct 303  Q
    |||| |||| || ||||||||| ||||||||||||| ||| ||||||||||||||||| || | | |||||| ||||||    
T  37385299 atgatatttgtacaactattttttgacaacttttgtacaactttctctctcatactcacatgacattcttattatctct 37385221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 2347125 - 2347044
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| |||||||||||||||| || ||| ||||||||||||||||| || ||||| ||||  ||||||||    
T  2347125 atgatatttgtacaaccattttgtgacaactttggtacaactttctctctcatactcacatgatagttttatcctctctctt 2347044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 4971295 - 4971376
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| ||||||||||||||||| | ||| ||||||||||||||||| || ||| |||||  |||||||||    
T  4971295 atgatatttgtacaaccattttgtgacaacttttatacaactttctctctcatactcacattatattcttactatctctctt 4971376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 43255617 - 43255552
Alignment:
Q  241 tattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| |||||| ||||||||| ||||||||||| || | | |||||| |||||||||    
T  43255617 tattttgtgacaatttttgtacaattttctttctcatactcacatgacattcttatcatctctctt 43255552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 305
Target Start/End: Original strand, 26153651 - 26153730
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctct 305  Q
    |||| |||| || ||||||||| ||||||||||||  ||||||||||||||||||||| || ||| ||||||  |||||||    
T  26153651 atgatatttgtacaactattttatgacaacttttga-caattttctctctcatactcacattatattcttattctctctct 26153730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Original strand, 116636 - 116707
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    |||| |||| || |||||||||||| ||||||| || ||| ||||||||||||||||| || || |||||||    
T  116636 atgatatttatacaactattttgtgccaactttggtacaactttctctctcatactcacatgatggtcttat 116707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 29162326 - 29162263
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    |||||||||||||||||  || |||||||||||||||||||| ||  ||||||  |||||||||    
T  29162326 tttgtgacaacttttgtataactttctctctcatactcatatgatgatcttatcctctctcttt 29162263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 27164884 - 27164822
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||||||||||||||  || ||||||||||||||||| || || |||||||  ||||||||    
T  27164884 tttgtgacaacttttgtataactttctctctcatactcacatgatggtcttatcctctctctt 27164822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 296
Target Start/End: Complemental strand, 30402224 - 30402170
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    ||||| ||| |||||||||  || |||||||||||||||||||| ||||||||||    
T  30402224 attttttgataacttttgtataactttctctctcatactcatatgatagtcttat 30402170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 28548287 - 28548230
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||||||||||  ||||||||||| ||| |||||||||||||||||    
T  28548287 atgatatttgtacaactattttggtacaacttttgtacaactttctctctcatactca 28548230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 33180759 - 33180718
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  33180759 attttgtgacaacttttatgacaattttctctctcatactca 33180718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 37969936 - 37969993
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||||||||||  ||||||||||| ||| |||||||||||||||||    
T  37969936 atgatatttgtacaactattttgatacaacttttgtacaactttctctctcatactca 37969993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 39533451 - 39533370
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| ||||||  ||||||||| | ||||||||||||||||| |||||||||| | ||||  ||||||||    
T  39533451 atgatatttgtataaccattttgatacaacttttatacaattttctctctcatattcatatcatatttttattctctctctt 39533370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 44175567 - 44175632
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    ||||||||| ||||||||| ||| ||||||||||||||||| || || || || | ||||||||||    
T  44175567 attttgtgataacttttgtacaactttctctctcatactcacatgatggttttttcatctctcttt 44175632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 29763835 - 29763895
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatat 285  Q
    |||| |||| || ||| ||||||||| ||||||||| ||| ||||| ||||||||||||||    
T  29763835 atgatatttgtacaaccattttgtgataacttttgtacaactttctttctcatactcatat 29763895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 37899345 - 37899393
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatatcata 289  Q
    |||||||||||||||||||| ||| ||| ||||||||||||| ||||||    
T  37899345 attttgtgacaacttttgtgacaactttatctctcatactcacatcata 37899393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 44511161 - 44511201
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||| ||| ||||||| |||||||||    
T  44511161 attttgtgacaacttttgtacaactttctctttcatactca 44511201  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 13159685 - 13159747
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| |||||||||||||||||||| || |||||||  ||||||||    
T  13159685 tttgtgacaacttttgtacaactttctctctcatactcatatgatggtcttatcgtctctctt 13159747  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 36818980 - 36819042
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||| |||||||  ||||||||    
T  36818980 tttgtgacaacttttgtacaactttctctctcatactcacatcatggtcttatcctctctctt 36819042  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 8254032 - 8254113
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| |||||||||||||||| || ||| ||||||||||||||||| || || ||||||| |||||||||    
T  8254032 atgatatttgtacaaccattttgtgacaactttggtacaactttctctctcatactcacatgatggtcttatcatctctctt 8254113  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 11327113 - 11327194
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| ||||||||||||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  11327113 atgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctctt 11327194  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 38944207 - 38944150
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||||| ||||||||||||||||| |||||||||||||||||||||    
T  38944207 atgatatttgtacaactaatttgtgacaacttttgtacaattttctctctcatactca 38944150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 3958065 - 3958003
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||||||| ||||||||||||||||| || || |||||||  ||||||||    
T  3958065 tttgtgacaacttctgtgcaactttctctctcatactcacatgatggtcttatcctctctctt 3958003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 44855256 - 44855313
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || |||||||||||||||||||||||  || |||||||||||||||||    
T  44855256 atgatatttgtataactattttgtgacaacttttgtataactttctctctcatactca 44855313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 46344419 - 46344500
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||||| ||||| |||| |||||| ||||||||||||||||| |||||| || |||||||  ||||||||    
T  46344419 atgatatttgtacaactaatttgttacaatttttgtacaattttctctctcatattcatatgatggtcttatcctctctctt 46344500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 245 - 306
Target Start/End: Original strand, 50879620 - 50879681
Alignment:
Q  245 ttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||||||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  50879620 ttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcttctctctt 50879681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 296
Target Start/End: Complemental strand, 32931965 - 32931913
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    ||||||||||||||||| ||| ||||||||||||||||| || || |||||||    
T  32931965 tttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttat 32931913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 48944776 - 48944716
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatat 285  Q
    |||| |||| || ||| ||||| | ||||||||||| ||||||||||||||||||||||||    
T  48944776 atgatatttgtacaaccattttctaacaacttttgtacaattttctctctcatactcatat 48944716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 50559278 - 50559222
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtg-caattttctctctcatact 280  Q
    |||| |||| || ||||||||| |||||||||||||| |||||||||||||||||||    
T  50559278 atgatatttgtacaactattttttgacaacttttgtgacaattttctctctcatact 50559222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 303
Target Start/End: Complemental strand, 40559047 - 40558988
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctct 303  Q
    ||||||||||||||||| ||| |||||| |||||||||| || || ||||||| ||||||    
T  40559047 tttgtgacaacttttgtacaactttctccctcatactcacatgatggtcttatcatctct 40558988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 6178491 - 6178434
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    |||| |||| || ||||||||| |||||||||||||| |||||||||||||||||||||    
T  6178491 atgatatttgtacaactatttt-tgacaacttttgtgacaattttctctctcatactca 6178434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 295
Target Start/End: Complemental strand, 7867777 - 7867707
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtctta 295  Q
    |||| |||| || |||||||||||||||||||||   ||||||||| ||||||||||| || ||| |||||    
T  7867777 atgatatttgtacaactattttgtgacaacttttaaacaattttctttctcatactcacattatattctta 7867707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 20714267 - 20714329
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  20714267 tttgtgacaacttctgtacaactttctctctcatactcacatgatggtcttatcctctctctt 20714329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 30400203 - 30400165
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  30400203 tttgtgacaacttttgtacaactttctctctcatactca 30400165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 49196701 - 49196782
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtg-caattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| |||||||||||||||| ||| ||||||||||||||||||||| || ||| ||||||  ||||||||    
T  49196701 atgatatttgtacaaccattttgtgacaacttt-gtgacaattttctctctcatactcacattatactcttattctctctctt 49196782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 53102949 - 53102887
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||| | ||| ||||||||||||||||| || || |||||||  ||||||||    
T  53102949 tttgtgacaacttttatacaactttctctctcatactcacatgatggtcttattctctctctt 53102887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 307
Target Start/End: Original strand, 29525255 - 29525320
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    ||||| ||||||||||||| |||| |||||||||||||||| || ||  ||||||  |||||||||    
T  29525255 attttatgacaacttttgtacaatattctctctcatactcacattatcttcttatcctctctcttt 29525320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 38471647 - 38471704
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||| ||||||  ||||||||||| |||||||||||||||||||||    
T  38471647 atgatatttgtacaaccattttggtacaacttttgtacaattttctctctcatactca 38471704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 45150319 - 45150262
Alignment:
Q  238 aactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtctta 295  Q
    |||||||||||||||||||||   ||| ||||||||||||||||| || ||| |||||    
T  45150319 aactattttgtgacaacttttagacaactttctctctcatactcacattatattctta 45150262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 306
Target Start/End: Complemental strand, 7263 - 7199
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||| ||||||||||||  ||| ||||||||||||||||| || ||| ||||||  ||||||||    
T  7263 attttctgacaacttttggacaactttctctctcatactcacattatattcttatcctctctctt 7199  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 41293787 - 41293706
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| ||||||| ||| | ||||||||||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  41293787 atgatatttttacaaccaatttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcttctctctt 41293706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 36064052 - 36064116
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||||  ||||||||||||||||||||| || | | |||||| |||||||||    
T  36064052 attttgtgacaacttttggacaattttctctctcatactcacatgacattcttatcatctctctt 36064116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 244 - 307
Target Start/End: Complemental strand, 30927978 - 30927915
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    |||||||||| |||||| ||| |||||||||||||||||||| || |||||||  |||||||||    
T  30927978 tttgtgacaatttttgtacaactttctctctcatactcatatgatggtcttatcctctctcttt 30927915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 41273539 - 41273601
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  41273539 tttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctctt 41273601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 9549248 - 9549207
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    |||||||||||||||||||| |||||||||||||||||||||    
T  9549248 attttgtgacaacttttgtgacaattttctctctcatactca 9549207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 14228712 - 14228769
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||||||||||||| ||||||||| ||| |||||||||||||||||    
T  14228712 atgatatttgtacaactattttgtgataacttttgtacaactttctctctcatactca 14228769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 289
Target Start/End: Original strand, 3946262 - 3946310
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatatcata 289  Q
    |||||||||||||||||||| ||| ||||||||||||||||| ||||||    
T  3946262 attttgtgacaacttttgtgacaactttctctctcatactcacatcata 3946310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 6746096 - 6746056
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcata 284  Q
    ||||||||||||||||| ||| |||||||||||||||||||    
T  6746096 tttgtgacaacttttgtacaactttctctctcatactcata 6746056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 12735061 - 12735017
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatat 285  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||    
T  12735061 attttatgacaacttttgtgacaattttctctctcatactcatat 12735017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 1065441 - 1065503
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  1065441 tttgtgacaacttctgtacaactttctctctcatactcacatgatggtcttatcctctctctt 1065503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Complemental strand, 32185708 - 32185670
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  32185708 tttgtgacaacttttgtacaactttctctctcatactca 32185670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 40380301 - 40380343
Alignment:
Q  240 ctattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||| ||||||||||||| ||| |||||||||||||||||    
T  40380301 ctattttatgacaacttttgtacaactttctctctcatactca 40380343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 288
Target Start/End: Original strand, 18651390 - 18651439
Alignment:
Q  240 ctattttgtgacaacttttgtg-caattttctctctcatactcatatcat 288  Q
    |||||| || |||||||||||| ||||||||||||||||||||| |||||    
T  18651390 ctatttggtaacaacttttgtgacaattttctctctcatactcacatcat 18651439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 285
Target Start/End: Complemental strand, 37784413 - 37784380
Alignment:
Q  252 aacttttgtgcaattttctctctcatactcatat 285  Q
    ||||||||| ||||||||||||||||||||||||    
T  37784413 aacttttgtacaattttctctctcatactcatat 37784380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 6656392 - 6656352
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcata 284  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  6656392 tttgtgacaacttttgtacaactttctctcttatactcata 6656352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 6736794 - 6736754
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcata 284  Q
    ||||||||||||||||| ||| ||||||||| |||||||||    
T  6736794 tttgtgacaacttttgtacaactttctctcttatactcata 6736754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000007; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 36383484 - 36383548
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||||| ||| ||||||||||||||||| || ||  |||||| |||||||||    
T  36383484 attttgtgacaacttttgtacaactttctctctcatactcacatgatgttcttatcatctctctt 36383548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 280
Target Start/End: Original strand, 20974358 - 20974413
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatact 280  Q
    |||| ||||||| ||||| ||||||||||||||||| ||| |||||||||||||||    
T  20974358 atgatatttttacaactaatttgtgacaacttttgtacaactttctctctcatact 20974413  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 225 - 308
Target Start/End: Complemental strand, 35171292 - 35171209
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttta 308  Q
    |||| |||| || ||| |||||||||||| ||| || ||| ||||||||||||||||| || || ||||||| |||||||||||    
T  35171292 atgatatttgtacaaccattttgtgacaattttggtacaactttctctctcatactcacatgatggtcttatcatctctcttta 35171209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 3196134 - 3196072
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||| ||||||||||||||||| || ||  |||||| |||||||||    
T  3196134 tttgtgacaacttttgtacaactttctctctcatactcacatgatgatcttatcatctctctt 3196072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 10687965 - 10688027
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||| | ||| ||||||||||||||||| || || ||||||| |||||||||    
T  10687965 tttgtgacaacttttatacaactttctctctcatactcacatgatggtcttatcatctctctt 10688027  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 305
Target Start/End: Complemental strand, 27307278 - 27307217
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctct 305  Q
    ||||||||||||||||| ||| ||||||||||||||||| || || |||||||  |||||||    
T  27307278 tttgtgacaacttttgtacaactttctctctcatactcacatgatggtcttatcctctctct 27307217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 307
Target Start/End: Complemental strand, 30487497 - 30487428
Alignment:
Q  238 aactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctcttt 307  Q
    ||||| ||||||||||||||||| ||| ||| ||||||||||||| || || |||||||  |||||||||    
T  30487497 aactaatttgtgacaacttttgtacaactttatctctcatactcacatgatggtcttatcctctctcttt 30487428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 285
Target Start/End: Complemental strand, 14233768 - 14233724
Alignment:
Q  242 attttgtgacaacttttgtg-caattttctctctcatactcatat 285  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||    
T  14233768 attttgtgacaacttttgtgacaaatttctctctcatactcatat 14233724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 14255320 - 14255371
Alignment:
Q  238 aactattttgtgacaacttttgtg-caattttctctctcatactcatatcat 288  Q
    ||||||||| |||||||||||||| |||||||||||| |||||||| |||||    
T  14255320 aactattttatgacaacttttgtgacaattttctctcacatactcacatcat 14255371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 34144598 - 34144536
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||||||| |||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  34144598 tttgtgacaatttttgtacaactttctctctcatactcacatgatggtcttatcctctctctt 34144536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 38246798 - 38246736
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||||||| ||||||  || |||||||||||||||||||| || |||||||  ||||||||    
T  38246798 tttgtgacaatttttgtagaactttctctctcatactcatatgatggtcttatcctctctctt 38246736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 3091746 - 3091803
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||||||||||||| |||||||   |||||||||||||||||||||    
T  3091746 atgatatttgtacaactattttgtgataactttttgacaattttctctctcatactca 3091803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 6884915 - 6884996
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||||| ||||||| ||||||| | ||| ||||||||||||||||| || || |||||||  ||||||||    
T  6884915 atgatatttgtacaactaatttgtgataacttttatacaactttctctctcatactcacatgatggtcttatcctctctctt 6884996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 238 - 282
Target Start/End: Original strand, 14876975 - 14877020
Alignment:
Q  238 aactattttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    ||||||||| |||||||||||||| ||| |||||||||||||||||    
T  14876975 aactattttttgacaacttttgtgacaactttctctctcatactca 14877020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 295
Target Start/End: Original strand, 28165151 - 28165204
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtctta 295  Q
    |||||||||||||||||   ||||||||||||||||||||| || ||| |||||    
T  28165151 attttgtgacaacttttagacaattttctctctcatactcacattatattctta 28165204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 29168730 - 29168811
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| ||||| ||||||||||||  ||| ||||||||||||||||| || | | |||||| |||||||||    
T  29168730 atgatatttgtacaaccattttttgacaacttttgcacaactttctctctcatactcacatgacattcttattatctctctt 29168811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 43076334 - 43076367
Alignment:
Q  255 ttttgtgcaattttctctctcatactcatatcat 288  Q
    |||||| |||||||||||||||||||||||||||    
T  43076334 ttttgtacaattttctctctcatactcatatcat 43076367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 44059768 - 44059731
Alignment:
Q  248 tgacaacttttgtgcaattttctctctcatactcatat 285  Q
    ||||||||||||| ||| ||||||||||||||||||||    
T  44059768 tgacaacttttgtacaactttctctctcatactcatat 44059731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Complemental strand, 44484722 - 44484641
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| ||||||| |||| |||||| ||| ||||||||||||||||| || ||  |||||| |||||||||    
T  44484722 atgatatttgtacaaccattttgtaacaatttttgtacaactttctctctcatactcacatgatgttcttatcatctctctt 44484641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 306
Target Start/End: Original strand, 38795382 - 38795446
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||| ||||||||| || ||| ||||||||||||||||| || || |||||||  ||||||||    
T  38795382 attttgagacaactttggtacaactttctctctcatactcacatgatggtcttatcctctctctt 38795446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 50145854 - 50145786
Alignment:
Q  238 aactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||||||||   ||||||||||||||||||||||| ||  | |||| |||||||||    
T  50145854 aactattttgtgacaacttttgaataattttctctctcatactcatatgatgttgttatcatctctctt 50145786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 3291472 - 3291410
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||| ||||||||||| ||||||||||| ||||||||| || || ||||||| |||||||||    
T  3291472 tttgttacaacttttgtacaattttctctttcatactcacatgatggtcttatcatctctctt 3291410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 18610778 - 18610835
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||||||||||||||||||||| | ||| |||||||||||||||||    
T  18610778 atgatatttgtacaactattttgtgacaacttttttacaactttctctctcatactca 18610835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 42256465 - 42256546
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || ||| |||||||||||||||| || ||| ||||||||||||||||| || || |||||||  ||||||||    
T  42256465 atgatatttgtacaaccattttgtgacaactttggtacaactttctctctcatactcacatgatggtcttatcctctctctt 42256546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 225 - 296
Target Start/End: Complemental strand, 7372014 - 7371943
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttat 296  Q
    |||| |||| || ||||| ||| |||||| |||||| ||||||||||||||||||| |||| || |||||||    
T  7372014 atgatatttgtacaactaatttatgacaatttttgtacaattttctctctcatacttatatgatggtcttat 7371943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 49645384 - 49645427
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactcatat 285  Q
    ||||| ||||||||||||| ||||||||||| ||||||||||||    
T  49645384 attttatgacaacttttgtacaattttctctttcatactcatat 49645427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 7078551 - 7078509
Alignment:
Q  240 ctattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||||  ||| |||||||||||||||||    
T  7078551 ctattttgtgacaacttttgaacaactttctctctcatactca 7078509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 13813582 - 13813644
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||| ||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  13813582 tttgtgacaacttctgtacaactttctctctcatactcacatgatggtcttatcctctctctt 13813644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 25130727 - 25130765
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||| ||| |||||||||||||||||    
T  25130727 tttgtgacaacttttgtacaactttctctctcatactca 25130765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 25995484 - 25995546
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||||||| |||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  25995484 tttgtgacaagttttgtacaactttctctctcatactcacatgatggtcttatcctctctctt 25995546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 306
Target Start/End: Complemental strand, 29489434 - 29489344
Alignment:
Q  216 ttaacagatatgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| ||| |||| |||| || ||| ||||||||| |||||| || ||| ||||||||||||||||| || || |||||||  ||||||||    
T  29489434 ttaagagaaatgatatttgtacaaccattttgtgataactttggtacaactttctctctcatactcacatgatggtcttatcctctctctt 29489344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 306
Target Start/End: Complemental strand, 6829860 - 6829770
Alignment:
Q  214 agttaacagatatgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||||| ||| |||| |||| || ||||| ||||||||||||||||| ||| ||| ||||||||  ||| || || ||||||| |||||||||    
T  6829860 agttaagagaaatgatatttgtacaactaatttgtgacaacttttgtacaactttatctctcat--tcacatgatggtcttatcatctctctt 6829770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 242 - 279
Target Start/End: Complemental strand, 35972853 - 35972816
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatac 279  Q
    ||||||||||||||||||| ||| ||||||||||||||    
T  35972853 attttgtgacaacttttgtacaactttctctctcatac 35972816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Complemental strand, 11097933 - 11097893
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    ||||||||||||||||||  ||| |||||||||||||||||    
T  11097933 attttgtgacaacttttgaacaactttctctctcatactca 11097893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 19651432 - 19651472
Alignment:
Q  242 attttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||||||||||||||||||  || |||||||||||||||||    
T  19651432 attttgtgacaacttttgtataactttctctctcatactca 19651472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 285
Target Start/End: Complemental strand, 21854514 - 21854470
Alignment:
Q  241 tattttgtgacaacttttgtgcaattttctctctcatactcatat 285  Q
    |||||||  ||||||||||| ||| ||||||||||||||||||||    
T  21854514 tattttggtacaacttttgtacaactttctctctcatactcatat 21854470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 1543 - 1481
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| |||||||||||||||| |||| || || |||||||  ||||||||    
T  1543 tttgtgacaacttttgtacaattttctctctcattctcacatgatggtcttattctctctctt 1481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 3660400 - 3660338
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| ||||||| ||||||||||||| || || |||||||  ||||||||    
T  3660400 tttgtgacaacttttgtacaattttttctctcatactcacatgatggtcttatcttctctctt 3660338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 282
Target Start/End: Complemental strand, 3339565 - 3339508
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactca 282  Q
    |||| |||| || ||| ||||||||||||||||||| ||| |||||||||||||||||    
T  3339565 atgatatttgtacaaccattttgtgacaacttttgtacaactttctctctcatactca 3339508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 34442116 - 34442071
Alignment:
Q  238 aactattttgtgacaacttttgtg-caattttctctctcatactca 282  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  34442116 aactattttatgacaacttttgtgacaattttctctctcatactca 34442071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 2056807 - 2056869
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||||||||||| | | ||||||||||||||||| || || |||||||  ||||||||    
T  2056807 tttgtgacaacttttgtactactttctctctcatactcacatgatggtcttatcctctctctt 2056869  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 27334863 - 27334944
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || |||||||||||||||||||||||  || ||||  ||||||||||| || || |||||||  ||||||||    
T  27334863 atgatatttgtacaactattttgtgacaacttttgtataactttccttctcatactcacatgatggtcttatcctctctctt 27334944  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 306
Target Start/End: Original strand, 27395603 - 27395684
Alignment:
Q  225 atgagatttttaaaactattttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    |||| |||| || |||||||||||||||||||||||  || ||||  ||||||||||| || || |||||||  ||||||||    
T  27395603 atgatatttgtacaactattttgtgacaacttttgtataactttccttctcatactcacatgatggtcttatcctctctctt 27395684  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 306
Target Start/End: Original strand, 27175987 - 27176043
Alignment:
Q  250 acaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||||| | |||||||||||||||||||||||| ||| | ||||  ||||||||    
T  27175987 acaacttttttacaattttctctctcatactcatattatatttttattctctctctt 27176043  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 285
Target Start/End: Original strand, 31869085 - 31869132
Alignment:
Q  238 aactattttgtgacaacttttgtg-caattttctctctcatactcatat 285  Q
    ||||||||||| |||||||||||| ||| ||||||||||||||||||||    
T  31869085 aactattttgt-acaacttttgtgacaactttctctctcatactcatat 31869132  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 241 - 280
Target Start/End: Complemental strand, 39033 - 38994
Alignment:
Q  241 tattttgtgacaacttttgtgcaattttctctctcatact 280  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  39033 tattttgtgacaacttttgaacaattttctctctcatact 38994  T

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Target: scaffold0011 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Original strand, 18619 - 18681
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||| ||||||||| ||| ||||||||||||||||| || || |||||||  ||||||||    
T  18619 tttgtgataacttttgtacaactttctctctcatactcacatgatggtcttattctctctctt 18681  T

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Target: scaffold0004 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 306
Target Start/End: Complemental strand, 249189 - 249127
Alignment:
Q  244 tttgtgacaacttttgtgcaattttctctctcatactcatatcatagtcttataatctctctt 306  Q
    ||||||| ||||||||| ||| ||||||||||||||||| || || ||||||| || ||||||    
T  249189 tttgtgataacttttgtacaactttctctctcatactcacatgatggtcttatcatttctctt 249127  T

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Target: scaffold0241 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 295
Target Start/End: Original strand, 5252 - 5304
Alignment:
Q  243 ttttgtgacaacttttgtgcaattttctctctcatactcatatcatagtctta 295  Q
    |||| ||||||||||| | ||| |||||||||||||||||||| ||| |||||    
T  5252 ttttttgacaacttttatacaactttctctctcatactcatattatattctta 5304  T

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