View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_50 (Length: 300)
Name: NF6698_high_50
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_50 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 54949586 - 54949323
Alignment:
| Q |
18 |
caggtctttttgttggaaaatcaatattgctagtatcattttggaattcaagttgagaggaatcaacccatgaacctgtcttatgatgtgagaaatagac |
117 |
Q |
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| T |
54949586 |
caggtctttttgttggaaaatcaatattgctagtatcattttggaattcaagttgagaggaatcaacccatgaacctgtcttatgatgtgagaaatagac |
54949487 |
T |
|
| Q |
118 |
tttccataatttaccatccaaattacttacccttaatgtcacatgctcccagtcaccaacatgttcacctattctctctaatttaatatttataaaccct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54949486 |
tttccataatttaccatccaaattacttacccttaatgtcacatgctcccagtcaccaacatgttcacctattctctctaatttaatatttataaaccct |
54949387 |
T |
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| Q |
218 |
atttttaaccttccaggtccattgaaagggtaaaaagtccacattgcaaaatcagtgaaggttc |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54949386 |
atttttaaccttccaggtccattgaaagggtaaaaagtccacattgcaaaatcagtgaaggttc |
54949323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 18 - 281
Target Start/End: Original strand, 26332672 - 26332935
Alignment:
| Q |
18 |
caggtctttttgttggaaaatcaatattgctagtatcattttggaattcaagttgagaggaatcaacccatgaacctgtcttatgatgtgagaaatagac |
117 |
Q |
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||||||||| ||| |||||||||| | ||||| |||| |||| || ||||||||||| | ||||||||||||||| ||||| || ||||||||||| |
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| T |
26332672 |
caggtctttgtgtcggaaaatcaaaactgctattatccatttgaaactcaagttgagatgcatcaacccatgaaccaccattatgttgagagaaatagac |
26332771 |
T |
|
| Q |
118 |
tttccataatttaccatccaaattacttacccttaatgtcacatgctcccagtcaccaacatgttcacctattctctctaatttaatatttataaaccct |
217 |
Q |
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| T |
26332772 |
atgccataactgaccatccaagttacttacccttaatgtcacatgctcccaatcaccaacatgttcacctacttttcccaatttaacatttataaacttt |
26332871 |
T |
|
| Q |
218 |
atttttaaccttccaggtccattgaaagggtaaaaagtccacattgcaaaatcagtgaaggttc |
281 |
Q |
| |
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||||| || ||||||||||||||||||||||| |||||| |||| ||||||||| |||| |
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| T |
26332872 |
attttagcttttgcaggtccattgaaagggtaaaaaacccacatggcaatatcagtgaatgttc |
26332935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 65 - 281
Target Start/End: Complemental strand, 26356476 - 26356260
Alignment:
| Q |
65 |
tcaagttgagaggaatcaacccatgaacctgtcttatgatgtgagaaatagactttccataatttaccatccaaattacttacccttaatgtcacatgct |
164 |
Q |
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||||| ||||| ||||||| |||| |||| | |||| ||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26356476 |
tcaagctgagaagaatcaatccattcacctttactatgttgtgagaaatataaatgccataatttaccatccaaattacttacccttaatgtcacatgct |
26356377 |
T |
|
| Q |
165 |
cccagtcaccaacatgttcacctattctctctaatttaatatttataaaccctatttttaaccttccaggtccattgaaagggtaaaaagtccacattgc |
264 |
Q |
| |
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|||| ||||||| ||||||||||||| || ||||||||| |||||||||| | |||| ||||| |||||||| |||||||||||| ||||||| || |
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| T |
26356376 |
cccaatcaccaatatgttcacctattttccctaatttaacatttataaacttcacttttgctcttcctggtccattaaaagggtaaaaaatccacatggc |
26356277 |
T |
|
| Q |
265 |
aaaatcagtgaaggttc |
281 |
Q |
| |
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|| ||| |||||||||| |
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| T |
26356276 |
aatatctgtgaaggttc |
26356260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 58 - 281
Target Start/End: Original strand, 26347945 - 26348168
Alignment:
| Q |
58 |
ttggaattcaagttgagaggaatcaacccatgaacctgtcttatgatgtgagaaatagactttccataatttaccatccaaattacttacccttaatgtc |
157 |
Q |
| |
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|||||| |||||||| || ||||||| ||||||||| ||||| ||||||||||| || | |||||||| |||||||||||||||||||||||||||| |
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| T |
26347945 |
ttggaactcaagttgggatgaatcaatccatgaaccaagattatgttgtgagaaatatacatgccataattgaccatccaaattacttacccttaatgtc |
26348044 |
T |
|
| Q |
158 |
acatgctcccagtcaccaacatgttcacctattctctctaatttaatatttataaaccctatttttaaccttccaggtccattgaaagggtaaaaagtcc |
257 |
Q |
| |
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|| |||||||| ||||||||||||||||||||| || ||||||| | ||||| ||| | | |||| || ||||||||||| |||||||||||| || |
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| T |
26348045 |
acgtgctcccaatcaccaacatgttcacctattttccctaatttcacatttaagaactccacttttgctctcccaggtccattaaaagggtaaaaaaccc |
26348144 |
T |
|
| Q |
258 |
acattgcaaaatcagtgaaggttc |
281 |
Q |
| |
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|||| |||| ||||||||| |||| |
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| T |
26348145 |
acatggcaatatcagtgaatgttc |
26348168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 19 - 281
Target Start/End: Original strand, 26337994 - 26338256
Alignment:
| Q |
19 |
aggtctttttgttggaaaatcaatattgctagtatcattttggaattcaagttgagaggaatcaacccatgaacctgtcttatgatgtgagaaatagact |
118 |
Q |
| |
|
||||||||||||||||||||||| | | |||| |||| ||||||| ||||||||||| ||||||| |||| ||| | || || || ||||| || || |
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| T |
26337994 |
aggtctttttgttggaaaatcaaaactactagcatcactttggaactcaagttgagatgaatcaatccatttaccagcattgtgttgagagaagtataca |
26338093 |
T |
|
| Q |
119 |
ttccataatttaccatccaaattacttacccttaatgtcacatgctcccagtcaccaacatgttcacctattctctctaatttaatatttataaacccta |
218 |
Q |
| |
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| |||||||| |||||| || ||||||||||||||||||||||||||||| |||||||||||||||||| | | | |||||||||| ||||||| ||| |
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| T |
26338094 |
tgccataattgaccatcgaagttacttacccttaatgtcacatgctcccaatcaccaacatgttcacctgcttttcccaatttaatatctataaactcta |
26338193 |
T |
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| Q |
219 |
tttttaaccttccaggtccattgaaagggtaaaaagtccacattgcaaaatcagtgaaggttc |
281 |
Q |
| |
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||| ||||||| |||||||||||| |||||| |||||| |||| ||||||||| |||| |
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| T |
26338194 |
ctttagctcttccagctccattgaaaggataaaaaacccacatggcaatatcagtgaatgttc |
26338256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 26324868 - 26324912
Alignment:
| Q |
143 |
cttacccttaatgtcacatgctcccagtcaccaacatgttcacct |
187 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
26324868 |
cttacccttaatgtcacatgctcccagtctcccacatgttcacct |
26324912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 28315286 - 28315338
Alignment:
| Q |
137 |
aaattacttacccttaatgtcacatgctcccagtcaccaacatgttcacctat |
189 |
Q |
| |
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||||||||||||||||| || ||||||||||| ||||||| |||||||||||| |
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| T |
28315286 |
aaattacttacccttaaagttacatgctcccaatcaccaatatgttcacctat |
28315338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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