View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_57 (Length: 276)

Name: NF6698_high_57
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_57
NF6698_high_57
[»] chr5 (5 HSPs)
chr5 (184-258)||(40198186-40198260)
chr5 (17-58)||(29692403-29692444)
chr5 (23-59)||(17028280-17028316)
chr5 (59-87)||(40198043-40198071)
chr5 (23-59)||(43442220-43442256)
[»] chr3 (3 HSPs)
chr3 (17-58)||(14339628-14339669)
chr3 (19-56)||(31788989-31789026)
chr3 (23-59)||(46518652-46518688)
[»] chr2 (4 HSPs)
chr2 (23-59)||(16918594-16918630)
chr2 (17-59)||(30838083-30838125)
chr2 (23-59)||(17737640-17737676)
chr2 (23-59)||(29503295-29503331)
[»] chr8 (2 HSPs)
chr8 (20-59)||(36205216-36205255)
chr8 (23-59)||(3305204-3305240)
[»] chr6 (2 HSPs)
chr6 (23-58)||(34293833-34293868)
chr6 (23-59)||(28363961-28363997)
[»] chr1 (7 HSPs)
chr1 (17-59)||(41508849-41508891)
chr1 (23-56)||(45235398-45235431)
chr1 (17-58)||(52116798-52116839)
chr1 (23-59)||(8177198-8177234)
chr1 (23-59)||(15786336-15786372)
chr1 (23-59)||(31794280-31794316)
chr1 (23-59)||(44046164-44046200)
[»] scaffold0291 (1 HSPs)
scaffold0291 (18-59)||(2486-2527)
[»] chr7 (1 HSPs)
chr7 (17-58)||(43590925-43590966)
[»] chr4 (4 HSPs)
chr4 (14-59)||(23377971-23378016)
chr4 (26-59)||(51969044-51969077)
chr4 (23-59)||(31759674-31759710)
chr4 (23-59)||(38869792-38869828)


Alignment Details
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 40198186 - 40198260
Alignment:
Q  184 tactattgatataattaaaatactgcatcagatctcaaaacccatattgtgatgcactggtttattgtggaatct 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  40198186 tactattgatataattaaaatactgcatcagatctcaaaacccatattgtgatgcactagtttattgtggaatct 40198260  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 29692444 - 29692403
Alignment:
Q  17 tggtgttattggtttgggatttgggagtgtgctcctcctcaa 58  Q
    ||||| |||||| ||||||| |||||||||||||||||||||    
T  29692444 tggtggtattggattgggatctgggagtgtgctcctcctcaa 29692403  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 17028316 - 17028280
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| |||||| |||||||||||||||||||||||    
T  17028316 tattgggttgggacttgggagtgtgctcctcctcaag 17028280  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 87
Target Start/End: Original strand, 40198043 - 40198071
Alignment:
Q  59 gttcgattcttttcgatgtcaatttaggt 87  Q
    |||||||||||||||||||||||||||||    
T  40198043 gttcgattcttttcgatgtcaatttaggt 40198071  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 43442220 - 43442256
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  43442220 tattggtttgagatctgggagtgtgctcctcctcaag 43442256  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 14339628 - 14339669
Alignment:
Q  17 tggtgttattggtttgggatttgggagtgtgctcctcctcaa 58  Q
    ||||| |||||| |||||||||||||||||||||||||||||    
T  14339628 tggtggtattggcttgggatttgggagtgtgctcctcctcaa 14339669  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 31789026 - 31788989
Alignment:
Q  19 gtgttattggtttgggatttgggagtgtgctcctcctc 56  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  31789026 gtgttattggcttgggatctgggagtgtgctcctcctc 31788989  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 46518652 - 46518688
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  46518652 tattggcttgggatctgggagtgtgctcctcctcaag 46518688  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 16918630 - 16918594
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||||||||||| ||||||||||||||||||||||    
T  16918630 tattggtttgggatctgggagtgtgctcctcctcaag 16918594  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 30838083 - 30838125
Alignment:
Q  17 tggtgttattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    ||||| |||||||||||||||||||| ||| ||||||||||||    
T  30838083 tggtgatattggtttgggatttgggaatgttctcctcctcaag 30838125  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 17737676 - 17737640
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||||||| || |||||||||||||||||||||||    
T  17737676 tattggtttgtgacttgggagtgtgctcctcctcaag 17737640  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 29503295 - 29503331
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||||||||||  ||||||||||||||||||||||    
T  29503295 tattggtttgggacctgggagtgtgctcctcctcaag 29503331  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 36205216 - 36205255
Alignment:
Q  20 tgttattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  36205216 tgttattggtttgagatctgggagtgtgctcctcctcaag 36205255  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 3305240 - 3305204
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||||||||||| |||||| |||||||||||||||    
T  3305240 tattggtttgggatctgggagcgtgctcctcctcaag 3305204  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 58
Target Start/End: Complemental strand, 34293868 - 34293833
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaa 58  Q
    ||||||||||| ||||||||||||||||||||||||    
T  34293868 tattggtttggaatttgggagtgtgctcctcctcaa 34293833  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 28363961 - 28363997
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||||||||||| || |||||||||||||||||||    
T  28363961 tattggtttgggatctgcgagtgtgctcctcctcaag 28363997  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 59
Target Start/End: Original strand, 41508849 - 41508891
Alignment:
Q  17 tggtgttattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    ||||| || ||||||||||| ||||||||||||||||||||||    
T  41508849 tggtggtactggtttgggatctgggagtgtgctcctcctcaag 41508891  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 56
Target Start/End: Complemental strand, 45235431 - 45235398
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctc 56  Q
    ||||||||||||| ||||||||||||||||||||    
T  45235431 tattggtttgggacttgggagtgtgctcctcctc 45235398  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Complemental strand, 52116839 - 52116798
Alignment:
Q  17 tggtgttattggtttgggatttgggagtgtgctcctcctcaa 58  Q
    ||||| |||||| |||||| ||||||||||||||||||||||    
T  52116839 tggtggtattggcttgggacttgggagtgtgctcctcctcaa 52116798  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 8177234 - 8177198
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  8177234 tattggcttgggatctgggagtgtgctcctcctcaag 8177198  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 15786372 - 15786336
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  15786372 tattggcttgggatctgggagtgtgctcctcctcaag 15786336  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31794316 - 31794280
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| |||||| |||||||||||||||||||||||    
T  31794316 tattggcttgggacttgggagtgtgctcctcctcaag 31794280  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 44046200 - 44046164
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  44046200 tattggcttgggatctgggagtgtgctcctcctcaag 44046164  T

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Target: scaffold0291 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 2527 - 2486
Alignment:
Q  18 ggtgttattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||| ||||||||| |||| ||||||||||||||||||||||    
T  2527 ggtggtattggttttggatctgggagtgtgctcctcctcaag 2486  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 43590925 - 43590966
Alignment:
Q  17 tggtgttattggtttgggatttgggagtgtgctcctcctcaa 58  Q
    ||||| |||||| |||||| ||||||||||||||||||||||    
T  43590925 tggtggtattggcttgggacttgggagtgtgctcctcctcaa 43590966  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Original strand, 23377971 - 23378016
Alignment:
Q  14 gtttggtgttattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||| |||||||||| ||||||  ||||||||||||||||||||||    
T  23377971 gtttagtgttattggcttgggacctgggagtgtgctcctcctcaag 23378016  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 59
Target Start/End: Original strand, 51969044 - 51969077
Alignment:
Q  26 tggtttgggatttgggagtgtgctcctcctcaag 59  Q
    ||||||| ||||||||||||||||||||||||||    
T  51969044 tggtttgagatttgggagtgtgctcctcctcaag 51969077  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31759710 - 31759674
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| |||||| |||||||||||||||||||||||    
T  31759710 tattggcttgggacttgggagtgtgctcctcctcaag 31759674  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 38869792 - 38869828
Alignment:
Q  23 tattggtttgggatttgggagtgtgctcctcctcaag 59  Q
    |||||| ||||||| ||||||||||||||||||||||    
T  38869792 tattggcttgggatctgggagtgtgctcctcctcaag 38869828  T

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