View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_6 (Length: 693)
Name: NF6698_high_6
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 39945349 - 39945027
Alignment:
| Q |
19 |
catcagtttggttaaccttctctcagtctattgagatcgccttgtaatttccattataggtagtaaatagttttcttttcacggtcatgaagtgaatttt |
118 |
Q |
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| T |
39945349 |
catcagtttggttaaccttctctcggtctattgagatcgccttgtaatttccattataggta---aatagttttcttttcacggtcatgaagtgaatttt |
39945253 |
T |
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| Q |
119 |
attagctccaatattcaatttnnnnnnnnnnnnnncattttaattgatcttactttgtccttgtttgtggagtaacaaatctaattattgttatgcttat |
218 |
Q |
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| T |
39945252 |
attagctccaatattcaatttaaaaataaaaaacttattttaattgatcttactttgtccttgtttgtggagtaacaaatctaattattgttatgcttat |
39945153 |
T |
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| Q |
219 |
gttcctcttttgtgtgcctttctttgagatatttttgcttaatgttgtattggccggagaagcaaccccgtgttcagctgcagatccaatggtgtaggga |
318 |
Q |
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| T |
39945152 |
gttcctcttttgtgtgcctttctttgagatatttttgcttaatgttgtattggccggagaagcaaccccgtgttcagctgcagatccaatggtgtaggga |
39945053 |
T |
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| Q |
319 |
aaagaaaaatgtaagaaaatatttgt |
344 |
Q |
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| T |
39945052 |
aaagaaaaatgtacgaaaatatttgt |
39945027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 360 - 568
Target Start/End: Complemental strand, 39945003 - 39944790
Alignment:
| Q |
360 |
cagtggtgtgtagagttcattatgcaatctagtagaacttattaatccaacgactcttaataatggtttaaggtgagggacttgttagagcctcacccta |
459 |
Q |
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| T |
39945003 |
cagtggtgtgtagagttcattatacaatctagtagaacttattaatccaacgactcttaatgatggtttaaggtgagggacttgttagagcctcacccta |
39944904 |
T |
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| Q |
460 |
caat-cacctattaattaattacccaatttcaagttgttatata----tagttatacttgtaaaatcaacacatacataaaagaattgcagcaaaactgc |
554 |
Q |
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| T |
39944903 |
caatccacctattaattaattacccaatttcaagttgttatatatagttagttatacttgtaaaatcaacacatacataaaagaattgcagcaaaactgc |
39944804 |
T |
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| Q |
555 |
tatttattgatgag |
568 |
Q |
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| T |
39944803 |
tatttattgatgag |
39944790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 620 - 671
Target Start/End: Complemental strand, 39944738 - 39944687
Alignment:
| Q |
620 |
actcgaatctaataagaatttatcttaactaacatatatcttcaatgtaaat |
671 |
Q |
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| T |
39944738 |
actcgaatctaataagaatttatcttaactaacatatatcttcaatgtaaat |
39944687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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