View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_60 (Length: 248)

Name: NF6698_high_60
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_60
NF6698_high_60
[»] chr4 (12 HSPs)
chr4 (38-231)||(45695795-45695988)
chr4 (49-210)||(38766071-38766232)
chr4 (32-214)||(31307047-31307229)
chr4 (49-213)||(14854584-14854748)
chr4 (32-214)||(45994500-45994682)
chr4 (63-214)||(13686579-13686731)
chr4 (52-214)||(35972321-35972483)
chr4 (49-162)||(9012300-9012413)
chr4 (92-203)||(10199148-10199256)
chr4 (58-125)||(47023469-47023536)
chr4 (164-215)||(51853675-51853726)
chr4 (49-159)||(51626304-51626414)
[»] chr8 (13 HSPs)
chr8 (49-218)||(30935978-30936147)
chr8 (53-214)||(36994502-36994663)
chr8 (41-204)||(19715715-19715879)
chr8 (32-214)||(2743911-2744093)
chr8 (49-215)||(12958083-12958249)
chr8 (88-202)||(35206990-35207104)
chr8 (49-213)||(4125022-4125186)
chr8 (106-211)||(44638964-44639069)
chr8 (51-201)||(13468745-13468895)
chr8 (63-201)||(30056013-30056151)
chr8 (67-189)||(15682932-15683054)
chr8 (49-136)||(7839251-7839338)
chr8 (91-213)||(8616158-8616280)
[»] chr3 (11 HSPs)
chr3 (49-213)||(48204309-48204473)
chr3 (53-211)||(38331109-38331267)
chr3 (39-213)||(30995953-30996127)
chr3 (32-213)||(27763702-27763881)
chr3 (90-215)||(14352531-14352660)
chr3 (32-136)||(20861304-20861408)
chr3 (32-178)||(22288249-22288395)
chr3 (49-159)||(55123130-55123240)
chr3 (53-137)||(39950267-39950351)
chr3 (38-151)||(1642647-1642760)
chr3 (134-214)||(44765724-44765803)
[»] chr2 (10 HSPs)
chr2 (81-215)||(12133260-12133394)
chr2 (53-214)||(5394375-5394535)
chr2 (51-168)||(14121882-14121999)
chr2 (32-209)||(18105344-18105520)
chr2 (133-211)||(3772625-3772703)
chr2 (32-214)||(17981476-17981657)
chr2 (91-213)||(24359544-24359665)
chr2 (148-213)||(28365928-28365993)
chr2 (32-213)||(42745097-42745278)
chr2 (105-213)||(44732627-44732735)
[»] chr7 (17 HSPs)
chr7 (32-213)||(29059784-29059965)
chr7 (50-215)||(19477249-19477413)
chr7 (67-214)||(13254117-13254264)
chr7 (32-198)||(31492097-31492263)
chr7 (107-183)||(22315827-22315903)
chr7 (50-213)||(35707826-35707988)
chr7 (45-136)||(20207553-20207644)
chr7 (105-211)||(2657890-2657996)
chr7 (164-214)||(5905800-5905850)
chr7 (119-213)||(8839349-8839443)
chr7 (53-138)||(28828767-28828852)
chr7 (65-131)||(14545004-14545070)
chr7 (119-201)||(27484117-27484199)
chr7 (88-214)||(28537368-28537494)
chr7 (32-125)||(11486725-11486818)
chr7 (49-110)||(24172291-24172352)
chr7 (157-213)||(21747145-21747201)
[»] chr1 (9 HSPs)
chr1 (49-213)||(16756061-16756225)
chr1 (45-217)||(10750573-10750744)
chr1 (48-128)||(46864155-46864235)
chr1 (148-213)||(45806215-45806280)
chr1 (32-131)||(42297423-42297522)
chr1 (134-215)||(6607777-6607858)
chr1 (53-214)||(22022098-22022259)
chr1 (32-97)||(36806706-36806771)
chr1 (33-165)||(9780971-9781103)
[»] chr6 (8 HSPs)
chr6 (119-203)||(12411137-12411221)
chr6 (32-183)||(28099252-28099403)
chr6 (55-213)||(25084013-25084171)
chr6 (52-109)||(6062125-6062182)
chr6 (48-137)||(24449987-24450076)
chr6 (74-211)||(28933119-28933256)
chr6 (133-206)||(31868689-31868762)
chr6 (32-136)||(12836878-12836982)
[»] chr5 (6 HSPs)
chr5 (49-213)||(10591906-10592070)
chr5 (76-178)||(2798340-2798442)
chr5 (76-178)||(2804507-2804609)
chr5 (32-136)||(5123479-5123583)
chr5 (105-214)||(28023497-28023606)
chr5 (52-141)||(35940807-35940895)
[»] scaffold0182 (1 HSPs)
scaffold0182 (32-183)||(26340-26491)


Alignment Details
Target: chr4 (Bit Score: 166; Significance: 6e-89; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 38 - 231
Target Start/End: Original strand, 45695795 - 45695988
Alignment:
Q  38 ggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgt 137  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  45695795 ggatattctctgcgcgcaactgcatagactaatccatcaagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgc 45695894  T
Q  138 tcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtatattgaggagtgttagt 231  Q
    |||||||| ||||||||| |||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  45695895 tcaaggttggattcaaacccaggaccttggtcaaactagaaaagactcgttctatctcatctaagcgttcttgggtatattgaggagtgttagt 45695988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 210
Target Start/End: Complemental strand, 38766232 - 38766071
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||| |||||| ||||   |||||||||| || ||  |||||| ||| | ||||||||||||| ||||  ||||| | ||    
T  38766232 gcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccctaagagttttaacgctgctgcatgcccaaggctgga 38766133  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttg 210  Q
    ||||||| |||||||||||| ||| ||||| ||||| |||| |||||||||||||| |||||    
T  38766132 ttcaaacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctcttg 38766071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 214
Target Start/End: Original strand, 31307047 - 31307229
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||| |||||| |||| | |||||||||| || || ||||||| ||| | ||||||| |||||    
T  31307047 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 31307146  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
     ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||  |||| |||||||||||| | |||||||||    
T  31307147 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggta 31307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 14854748 - 14854584
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||| |||||||||| |||||  |||| | |||||||||| || |||||||||| ||| | |||||||| |||| ||||  ||||| | ||    
T  14854748 gcgcgcaactgcagagactaatccctcgagaattgttggacccaaatgggcggcaagctctccctaagagttttaacgatgctgcatgcccaaggctgga 14854649  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||| ||| ||| |||||||| ||| ||||| |||   |||| |||||||||||||| ||||||||    
T  14854648 ttcgaacccagaaccttggttaagctagaagagaaccgttccatctcatctaagcgctcttgggt 14854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 45994682 - 45994500
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    |||||||| ||| ||  ||| ||||||||  |||||||||  |||||| ||||   |||||||||| || || ||||||| ||| | |||||||| || |    
T  45994682 taaactgggtatccttggcgtgcaactgcggagactaatctctcgagcattgtgagacccaaatgggcgtcaggctctccctaagagttttaacgttgtt 45994583  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
     ||||  ||||| | ||||| ||  |||||||||||| ||| ||||| |||| ||||| ||||||||||| || |||||||||    
T  45994582 gcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgctcttgggta 45994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 214
Target Start/End: Complemental strand, 13686731 - 13686579
Alignment:
Q  63 agactaatccatcgagccttgtagaacccaaatggacgacaagctct-ccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcagga 161  Q
    |||||||||  |||||||||||   ||||||||||||| ||| |||| |||||| | ||||||||||||| || |  ||||| | ||||| ||| |||||    
T  13686731 agactaatctctcgagccttgtgagacccaaatggacggcaaactctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccagga 13686632  T
Q  162 ccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    ||||||| |||  |||| ||||   | | |||||||||||||| |||||||||    
T  13686631 ccttggttaagcaagaagagacccatgccatctcatctaagcgctcttgggta 13686579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 52 - 214
Target Start/End: Complemental strand, 35972483 - 35972321
Alignment:
Q  52 cgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattc 151  Q
    |||||||||  |||||||||| |||| | | || | |||||||||| || ||| |||||| ||| | |||||||||||||  |||  || || | |||||    
T  35972483 cgcaactgcggagactaatccctcgaacatagtgggacccaaatgggcggcaaactctccctaatagttttaacgctgctgtatgcccatggctggattc 35972384  T
Q  152 aaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
     ||| || ||||||||| ||| ||||| || |  |||| |||||||||||||| |||||||||    
T  35972383 gaacccaagaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttgggta 35972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 49 - 162
Target Start/End: Complemental strand, 9012413 - 9012300
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||| |||||| |||| | |||||| ||| || |||||||||| ||| | ||| ||| ||||| ||||  ||||| ||||    
T  9012413 gcgcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccctaagagtttgaacactgctgcatgcccaaggctaga 9012314  T
Q  149 ttcaaactcaggac 162  Q
    ||| ||| ||||||    
T  9012313 ttcgaacccaggac 9012300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 10199148 - 10199256
Alignment:
Q  92 aaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttcta 191  Q
    |||||| || ||||||||||||||   |||||||||||| ||||| ||||| || ||||| ||| || ||||||||| |||||| || ||||  |||| |    
T  10199148 aaatgggcggcaagctctccttaag--ttttaacgctgccacatgctcaag-ttggattcgaacacaagaccttggttaagttataagagacccgttcca 10199244  T
Q  192 tctcatctaagc 203  Q
    ||||||||||||    
T  10199245 tctcatctaagc 10199256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 125
Target Start/End: Complemental strand, 47023536 - 47023469
Alignment:
Q  58 tgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaac 125  Q
    |||| |||||||||| ||||| ||||| | ||||||||||||||||| |||||| ||| | |||||||    
T  47023536 tgcagagactaatccttcgagtcttgtgggacccaaatggacgacaaactctccctaagagttttaac 47023469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 164 - 215
Target Start/End: Complemental strand, 51853726 - 51853675
Alignment:
Q  164 ttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtat 215  Q
    ||||| ||||||||| |||||  |||||||||||||||||| ||||||||||    
T  51853726 ttggttaagttagaagagactcattctatctcatctaagcgctcttgggtat 51853675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 51626304 - 51626414
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||  ||||||  ||| | ||||||||||||| ||  |||||| ||||| ||||||| ||||| ||||  ||||| | ||    
T  51626304 gcgcgcaactgcggagactaatctctcgagcactgtgggacccaaatggacggcagactctccctaaaagttttaacactgctgcatgcccaaggctgga 51626403  T
Q  149 ttcaaactcag 159  Q
    ||| |||||||    
T  51626404 ttcgaactcag 51626414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 49 - 218
Target Start/End: Complemental strand, 30936147 - 30935978
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||| |||| | |||| | |||||||||| || || ||||||| ||| | |||||||| |||| |||| | |||| | ||    
T  30936147 gcgcgcaactgcggagactaatccctcgaacattgtcggacccaaatgggcggcaggctctccctaagagttttaacgttgctgcatgcttaaggctgga 30936048  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtatatt 218  Q
    ||| |||||||||||||||| ||||||||| ||||  |||| |||||||||||| | |||||||||||||    
T  30936047 ttcgaactcaggaccttggttaagttagaagagacccgttccatctcatctaagtgctcttgggtatatt 30935978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 214
Target Start/End: Original strand, 36994502 - 36994663
Alignment:
Q  53 gcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattca 152  Q
    ||||||||| |||||||||| ||||||||||| | |||||||||| |  ||| |||||||||| | ||||||||||||| ||||| ||||| | |||||     
T  36994502 gcaactgcagagactaatccctcgagccttgtgggacccaaatgggcagcaaactctccttaagagttttaacgctgctgcatgtccaaggctggattcg 36994601  T
Q  153 aactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    ||| |||||||||||| ||  ||||| |||| ||| | |||| ||||||||| |||||||||    
T  36994602 aacccaggaccttggttaaactagaagagacatgtgccatcttatctaagcgctcttgggta 36994663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 204
Target Start/End: Original strand, 19715715 - 19715879
Alignment:
Q  41 tattctctgcgcgcaactgcatagactaatcca-tcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttc 139  Q
    ||||||| ||||||||||||  ||||||||||  |||||| |||| | |||||||||| || |||||||||| | | | ||||||||||||| ||||  |    
T  19715715 tattctccgcgcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccctgagagttttaacgctgctgcatgccc 19715814  T
Q  140 aaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcg 204  Q
    |||| | ||||| ||| |||||||||||| ||| |||||||||| ||||| ||||||||||||||    
T  19715815 aaggctggattcgaacccaggaccttggttaagctagaaaagacatgttccatctcatctaagcg 19715879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 2744093 - 2743911
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||| |||||| |||| | |||||||||||||||| ||||||| ||| | ||||||| |||||    
T  2744093 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatggacgacatgctctccctaagagttttaacactgct 2743994  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
     ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||  |||| |||||||||||  | |||||||||    
T  2743993 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgctcttgggta 2743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 12958083 - 12958249
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    |||||| |||||  |||||||||| |||||| |||| | |||||||||| ||||| ||||||| ||| | ||||||||||||| ||||  ||| | | ||    
T  12958083 gcgcgctactgcggagactaatccctcgagcattgtgggacccaaatgggcgacaggctctccctaagagttttaacgctgctgcatgcccaatgctgga 12958182  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtat 215  Q
    ||||||| || ||||||||| ||| ||||| ||||| |||| |||||||||||||  ||||||||||    
T  12958183 ttcaaacccatgaccttggttaagctagaagagactagttccatctcatctaagcactcttgggtat 12958249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 35207104 - 35206990
Alignment:
Q  88 acccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgt 187  Q
    |||||||||||||||| ||| ||||||| | ||||||||||||| ||||| |||||||| |||| ||| ||| | |||||| ||||||||| |||| |||    
T  35207104 acccaaatggacgacatgctttccttaagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgt 35207005  T
Q  188 tctatctcatctaag 202  Q
    |  ||||||||||||    
T  35207004 ttcatctcatctaag 35206990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 4125022 - 4125186
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||| |||||| |||| | |||||||||| || || ||||||| ||| | |||||||  |||| ||||  ||||| | ||    
T  4125022 gcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacagtgctgcatgcccaaggcttga 4125121  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||| ||| |||||| ||||| ||| ||||| ||||  |||| |||||||||||| | ||||||||    
T  4125122 ttcgaacccaggacattggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 4125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 44639069 - 44638964
Alignment:
Q  106 ctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgt 205  Q
    |||||| ||| | |||||||| || | |||| |||||||| |||||||| ||||||||||| | ||||||||| |||| ||| | |||||| ||||||||    
T  44639069 ctctccctaagagttttaacgttgttgcatgctcaaggttggattcaaattcaggaccttgattaagttagaagagacatgtgcaatctcacctaagcgt 44638970  T
Q  206 tcttgg 211  Q
    ||||||    
T  44638969 tcttgg 44638964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 201
Target Start/End: Original strand, 13468745 - 13468895
Alignment:
Q  51 gcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagatt 150  Q
    ||||||||||  |||||||||| |||||| |||| | || ||||||| || ||  |||||  ||| | ||||||||||||||||||  ||||| | ||||    
T  13468745 gcgcaactgcggagactaatccttcgagcattgtgggactcaaatgggcggcagactctctctaagagttttaacgctgctacatgcccaaggctggatt 13468844  T
Q  151 caaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaa 201  Q
    | ||| |||||||||||| ||| ||||| ||||  |||| |||| ||||||    
T  13468845 cgaacccaggaccttggttaagctagaagagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 201
Target Start/End: Original strand, 30056013 - 30056151
Alignment:
Q  63 agactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggac 162  Q
    |||||||||| |||||| |||| ||||||||||||||| || ||||||| ||| | |||||| |||||| ||||   |||| | ||||  ||| || |||    
T  30056013 agactaatccctcgagcattgtggaacccaaatggacggcaggctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgac 30056112  T
Q  163 cttggtcaagttagaaaagacttgttctatctcatctaa 201  Q
    ||| || ||| ||||| |||| ||||| |||||||||||    
T  30056113 cttcgttaagctagaagagacatgttccatctcatctaa 30056151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 15683054 - 15682932
Alignment:
Q  67 taatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttg 166  Q
    |||||| |||||| |||| | ||| |||||| || || ||||||| ||| | ||||||||||||| ||||  ||||| | ||||| ||||||||||||||    
T  15683054 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttg 15682955  T
Q  167 gtcaagttagaaaagacttgttc 189  Q
     | ||| ||||| ||||| ||||    
T  15682954 attaagctagaagagactcgttc 15682932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 7839251 - 7839338
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatg 136  Q
    ||||||||||||  |||||||||| |||||| |||| | |||||||||| || || ||||||| ||| | |||||| |||||| ||||    
T  7839251 gcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccctaagagttttaaagctgctgcatg 7839338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 213
Target Start/End: Original strand, 8616158 - 8616280
Alignment:
Q  91 caaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttct 190  Q
    ||||||||||| || || || |||| ||||||||| | | | ||||| |||||||||||| |||| || ||| ||||| || |||||| |||||| |  |    
T  8616158 caaatggacgataaactttctttaagaattttaacacggatgcatgtccaaggttagatttaaacacatgactttggttaaattagaagagacttttgtt 8616257  T
Q  191 atctcatctaagcgttcttgggt 213  Q
    |||||||| ||| ||| ||||||    
T  8616258 atctcatccaagtgtttttgggt 8616280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 49 - 213
Target Start/End: Original strand, 48204309 - 48204473
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  | |||||||| | |||| |||| |||||||||||||||||||||||||| |||   |||||||| |||| ||||  ||||| | ||    
T  48204309 gcgcgcaactgcggaaactaatcccttgagcattgtggaacccaaatggacgacaagctctccctaagggttttaacgttgctgcatgcccaaggctgga 48204408  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||| ||| || ||||||||| ||| ||||| ||||| |||| |||||||||||||  ||||||||    
T  48204409 ttcgaacccaagaccttggttaagctagaagagactcgttccatctcatctaagcactcttgggt 48204473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 53 - 211
Target Start/End: Complemental strand, 38331267 - 38331109
Alignment:
Q  53 gcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattca 152  Q
    ||||||||  |||||||||| || | | |||| | |||||||||| || |||||||||  ||| | ||||||||||||| |||| |||| ||| ||||||    
T  38331267 gcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctctctaagagttttaacgctgctgcatgctcaaagttggattca 38331168  T
Q  153 aactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgg 211  Q
    |||||||||| ||||| ||||||||| ||||  | || |||||||||||||| ||||||    
T  38331167 aactcaggacattggttaagttagaagagacccgatccatctcatctaagcgctcttgg 38331109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 213
Target Start/End: Original strand, 30995953 - 30996127
Alignment:
Q  39 gatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgtt 138  Q
    ||||| ||| ||||||||||||  |||||||||| |||||| |||| | ||||| |||| || ||  |||||| ||| | ||||||||||| | ||||      
T  30995953 gatatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccagatgggcggcagactctccctaagagttttaacgctgttgcatgcc 30996052  T
Q  139 caaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||||||  ||||| ||| |||||||||||| ||| ||||| ||||  |||| |||||||||||||| ||||||||    
T  30996053 caaggtcggattcgaacccaggaccttggttaagatagaagagacccgttccatctcatctaagcgctcttgggt 30996127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 27763881 - 27763702
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| |||||| ||||||||||||||||  |||||||||| |||||| |||| | || |||||||||| ||  |||||| ||| | ||||||| ||| |    
T  27763881 taaaccggatatcctctgcgcgcaactgcggagactaatccctcgagcattgtgggactcaaatggacggcagactctccctaagagttttaacactgtt 27763782  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
      |||  ||||| | ||||| ||| |||||||||||| ||| |||   ||||  ||||||||||||||||||| ||||||||    
T  27763781 gtatgcccaaggctggattcgaacccaggaccttggttaagctag--gagacccgttctatctcatctaagcgctcttgggt 27763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 90 - 215
Target Start/End: Complemental strand, 14352660 - 14352531
Alignment:
Q  90 ccaaatggacgacaagctctccttaaaaattttaacgctgctacatg----ttcaaggttagattcaaactcaggaccttggtcaagttagaaaagactt 185  Q
    |||||||||||||||||||||| ||| | ||||||| ||||| ||||    | ||||| | ||||| |||  |  | |||||| ||| ||||| ||||||    
T  14352660 ccaaatggacgacaagctctccgtaagagttttaacactgctgcatgcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagactt 14352561  T
Q  186 gttctatctcatctaagcgttcttgggtat 215  Q
    |||| |||||||||||||| ||||||||||    
T  14352560 gttccatctcatctaagcgctcttgggtat 14352531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 20861408 - 20861304
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    |||||||| ||| ||| |||| |||||||  |||||||||| |||||| || | |||||||||||| || || ||||||| ||| | |||||||||||||    
T  20861408 taaactgggtatcctccgcgcacaactgcggagactaatccctcgagcattatggaacccaaatgggcggcaggctctccctaagagttttaacgctgct 20861309  T
Q  132 acatg 136  Q
     ||||    
T  20861308 gcatg 20861304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 178
Target Start/End: Complemental strand, 22288395 - 22288249
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| |||| |||||||| |||||||| | | |||  ||||  ||| ||||||||||||||| ||||| ||| | |||||||  || |    
T  22288395 taaaccgggtatcctccgcgcacaactgcagagactaattccttgagtattgtgtaactcaaatggacgacaagttctccctaagagttttaacattgtt 22288296  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaa 178  Q
     ||||||||||| |  |||| |||||||||| ||||| |||||||||    
T  22288295 gcatgttcaaggctgaattcgaactcaggactttggttaagttagaa 22288249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 159
Target Start/End: Complemental strand, 55123240 - 55123130
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||| |||||| ||||   ||||||||||    |||||||||| ||| ||||||||||||||| ||| | ||||| | ||    
T  55123240 gcgcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccctaagaattttaacgctgctgcatttccaaggctgga 55123141  T
Q  149 ttcaaactcag 159  Q
    ||| |||||||    
T  55123140 ttcgaactcag 55123130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 137
Target Start/End: Complemental strand, 39950351 - 39950267
Alignment:
Q  53 gcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgt 137  Q
    ||||||||  |||||||||| |||||| |||| | | ||||||| ||||||   ||||| ||||||||||||||||||| |||||    
T  39950351 gcaactgcggagactaatccttcgagcattgtcggatccaaatgaacgacagattctccctaaaaattttaacgctgctgcatgt 39950267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 1642760 - 1642647
Alignment:
Q  38 ggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgt 137  Q
    |||||| ||| ||||||||||||  | |||||||| || ||  |||| | |||||||||||||  |  |||||| ||||| ||||||| | ||| |||||    
T  1642760 ggatatcctccgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaaagttttaacacggctgcatgt 1642661  T
Q  138 tcaaggttagattc 151  Q
    |||||| |||||||    
T  1642660 tcaaggctagattc 1642647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 44765803 - 44765724
Alignment:
Q  134 atgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    |||||||| |||||||||  | ||| |||||||||||| |||||||| |||| |   |||||||||||||| |||||||||    
T  44765803 atgttcaaagttagattcgtaatcatgaccttggtcaacttagaaaa-acttatatcatctcatctaagcgctcttgggta 44765724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 12133260 - 12133394
Alignment:
Q  81 ttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaa 180  Q
    |||||| ||||||||||||| || ||||||| ||| | |||||||| |||| ||||| ||||| | ||||| ||| || ||||||| | ||| ||||| |    
T  12133260 ttgtaggacccaaatggacggcaggctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaaga 12133359  T
Q  181 gacttgttctatctcatctaagcgttcttgggtat 215  Q
    |||| |||| |||||||||||||| ||||||||||    
T  12133360 gactcgttccatctcatctaagcgctcttgggtat 12133394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 5394535 - 5394375
Alignment:
Q  53 gcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattca 152  Q
    ||||||||  ||||||||||  ||||| |||| | |||||||||| || || ||||||| ||| | |||||||  |||| ||||  ||||| | |||||     
T  5394535 gcaactgcggagactaatcccacgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaaca-tgctgcatgcccaaggctggattcg 5394437  T
Q  153 aactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    ||| |||||||||||| ||| ||||| ||||| |||| |||||||||||||| |||| ||||    
T  5394436 aacccaggaccttggttaagctagaagagactcgttccatctcatctaagcgctctttggta 5394375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 168
Target Start/End: Original strand, 14121882 - 14121999
Alignment:
Q  51 gcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagatt 150  Q
    |||||||| ||||||||||||| |||||| |||| | || ||||||| || |||| ||||  ||| |||||||||| |||| ||||||||||  |  |||    
T  14121882 gcgcaacttcatagactaatccctcgagcattgtgggactcaaatgggcggcaagttctctctaagaattttaacgttgctgcatgttcaagactgaatt 14121981  T
Q  151 caaactcaggaccttggt 168  Q
    ||||||||||||| ||||    
T  14121982 caaactcaggaccctggt 14121999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 18105344 - 18105520
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| |||||| ||| ||||||||||||  |||||||||| |||||  ||||   || ||||||| || || ||||||| ||| |||||||||| || |    
T  18105344 taaaccggatatcctccgcgcgcaactgcg-agactaatccctcgagtattgtgagactcaaatgggcggcaggctctccataagaattttaacgttgtt 18105442  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttctt 209  Q
     ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||| |||| ||||||| |||||| ||||    
T  18105443 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagactcgttccatctcatataagcgctctt 18105520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 133 - 211
Target Start/End: Original strand, 3772625 - 3772703
Alignment:
Q  133 catgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgg 211  Q
    |||||||||| || ||||| |||| ||||||||||| || |||||| ||||||||   |||||||||||||| ||||||    
T  3772625 catgttcaagattggattcgaacttaggaccttggttaaattagaagagacttgtgtcatctcatctaagcgctcttgg 3772703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 214
Target Start/End: Complemental strand, 17981657 - 17981476
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||  |||||| |||| | |||||||| | || |||||||||| ||| | |||||| | || |    
T  17981657 taaaccgggtatcctccgcgcgcaactgcggagactaatctctcgagcattgtgggacccaaattg-cggcaagctctccctaagagttttaatgttgtt 17981559  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
     ||||  ||||  | |||| ||| ||||||| ||||| ||| ||||| ||||| |||| |||||||||||||| | |||||||    
T  17981558 gcatgcccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaagcgctattgggta 17981476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 24359665 - 24359544
Alignment:
Q  91 caaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttct 190  Q
    ||||||||| |||| |||||| ||||| |||||| | |||| |||  |||||| | |||||||||  ||||||||| | ||||||||| |||||  |||     
T  24359665 caaatggaccacaaactctccctaaaagttttaatgttgctgcattatcaaggctggattcaaacctaggaccttgattaagttagaagagactatttc- 24359567  T
Q  191 atctcatctaagcgttcttgggt 213  Q
    || ||||||||||| ||||||||    
T  24359566 atatcatctaagcgctcttgggt 24359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 28365993 - 28365928
Alignment:
Q  148 attcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    |||| |||||| ||||||||| ||||||||| ||||  |||| |||||||||||||| ||||||||    
T  28365993 attcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgggt 28365928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 213
Target Start/End: Original strand, 42745097 - 42745278
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||| |||| | |||| |||||||||| | |  ||  |||||| ||| | |||||||  ||||    
T  42745097 taaaccgggtatcctccgcgcgcaactgctgagactaatccctcgaccattgtggaacccaaataggcagcagactctccctaagagttttaacattgct 42745196  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
     ||||  ||||| | ||||| ||| || ||||||||| ||| || || ||||  |||| |||||||||||||| ||||||||    
T  42745197 gcatgcccaaggctggattcgaacccaagaccttggttaagctataagagacccgttccatctcatctaagcgctcttgggt 42745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 213
Target Start/End: Original strand, 44732627 - 44732735
Alignment:
Q  105 gctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcg 204  Q
    ||||||| ||| | ||||||| ||||| ||||  ||||| | ||||| ||| |||||||||||| ||| || || ||||  |||| |||||||||||| |    
T  44732627 gctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctcatctaagtg 44732726  T
Q  205 ttcttgggt 213  Q
     ||||||||    
T  44732727 ctcttgggt 44732735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 32 - 213
Target Start/End: Complemental strand, 29059965 - 29059784
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||| || ||| |||| | |||||||||| || || ||||||| ||| | ||||||| |||||    
T  29059965 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 29059866  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
     ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||  |||| |||||||||||| | ||||||||    
T  29059865 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaagtgctcttgggt 29059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 215
Target Start/End: Original strand, 19477249 - 19477413
Alignment:
Q  50 cgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagat 149  Q
    |||||||||||  |||||||||| || ||| |||| | |||||||||| || |||||||||| ||| | ||||||| ||| | ||||  ||||| | |||    
T  19477249 cgcgcaactgcggagactaatccctc-agcattgtgggacccaaatggccggcaagctctccctaagagttttaacactgttgcatgcccaaggctggat 19477347  T
Q  150 tcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtat 215  Q
    |||||| ||| |||||||| ||| ||||| ||||  |||| ||||||||||| || ||||||||||    
T  19477348 tcaaacccagaaccttggttaagctagaagagacccgttccatctcatctaaacgctcttgggtat 19477413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 214
Target Start/End: Original strand, 13254117 - 13254264
Alignment:
Q  67 taatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttg 166  Q
    |||||| |||||| |||| | ||| |||||| || || ||||||| ||| | ||| ||||||||| ||||   |||| | ||||| ||||||||||||||    
T  13254117 taatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttg 13254216  T
Q  167 gtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    || ||| ||||| ||||  |||| |||||||||||||| |||||||||    
T  13254217 gttaagctagaagagacccgttccatctcatctaagcgctcttgggta 13254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 31492263 - 31492097
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||| |||||| |||| | ||| |||||| || || ||||||| ||| | ||||||| |||||    
T  31492263 taaaccgggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccctaagagttttaacactgct 31492164  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatc 198  Q
     ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||  |||| ||||||||    
T  31492163 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatc 31492097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 183
Target Start/End: Original strand, 22315827 - 22315903
Alignment:
Q  107 tctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagac 183  Q
    |||||||||||||||||| ||| || ||||| ||||||| |||| ||||||| ||||||||| ||||||||| ||||    
T  22315827 tctccttaaaaattttaaggctcctgcatgtccaaggttggattgaaactcatgaccttggttaagttagaagagac 22315903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 213
Target Start/End: Complemental strand, 35707988 - 35707826
Alignment:
Q  50 cgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagat 149  Q
    |||||||||||| |||||||||| |||||| |||||| | | ||||||  | |||| ||||| ||| |||||||||| || | ||||| ||| ||| |||    
T  35707988 cgcgcaactgcagagactaatccctcgagcattgtaggatctaaatgggaggcaagttctccctaagaattttaacgttgttgcatgtccaaagttggat 35707889  T
Q  150 tcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    || ||| ||| |||||||| ||  ||||| |||| ||||| |||| |||||| || ||||||||    
T  35707888 tcgaac-cagaaccttggttaaactagaagagacctgttcaatctaatctaaacgctcttgggt 35707826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 136
Target Start/End: Complemental strand, 20207644 - 20207553
Alignment:
Q  45 ctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatg 136  Q
    ||||| ||||||||||  |||||||||| |||||| |||||| | |||||||  || |||||||||||||| | |||||||| || ||||||    
T  20207644 ctctgtgcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctccttaagagttttaacgttgttacatg 20207553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 105 - 211
Target Start/End: Original strand, 2657890 - 2657996
Alignment:
Q  105 gctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcg 204  Q
    ||||||||||| | |||||||| |||| ||||  ||||| |  |||  |||||||| ||||| | ||||||||| ||||| |||| ||||||||||||||    
T  2657890 gctctccttaagagttttaacgttgctgcatgcccaaggctgtatttgaactcagggccttgattaagttagaagagactcgttccatctcatctaagcg 2657989  T
Q  205 ttcttgg 211  Q
     ||||||    
T  2657990 ctcttgg 2657996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 164 - 214
Target Start/End: Complemental strand, 5905850 - 5905800
Alignment:
Q  164 ttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    ||||| ||||||||| ||||| ||||||||||||||||||||| |||||||    
T  5905850 ttggttaagttagaagagactcgttctatctcatctaagcgtttttgggta 5905800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 213
Target Start/End: Original strand, 8839349 - 8839443
Alignment:
Q  119 ttttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||||||||||||| ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||  |||  |||||||||||||| ||||||||    
T  8839349 ttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgctcttgggt 8839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 138
Target Start/End: Original strand, 28828767 - 28828852
Alignment:
Q  53 gcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgtt 138  Q
    ||||||||  |||||||||||| |||||||||   |||||||||||||| || |||||  | | | ||||||||||||||||||||    
T  28828767 gcaactgcgcagactaatccattgagccttgtgagacccaaatggacgataaactctctctgagagttttaacgctgctacatgtt 28828852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 14545070 - 14545004
Alignment:
Q  65 actaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||||||||||||| |||| | ||||||||||||| || ||||||| ||| | ||||||| |||||    
T  14545070 actaatccatcgagcattgtgggacccaaatggacggcaggctctccctaagagttttaacactgct 14545004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 27484117 - 27484199
Alignment:
Q  119 ttttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaa 201  Q
    ||||||||||||| ||||  || || | |||| ||||||||||||||||| ||| ||||| ||||||||   |||||||||||    
T  27484117 ttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagacttgtgtcatctcatctaa 27484199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 28537494 - 28537368
Alignment:
Q  88 acccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgt 187  Q
    |||||||||| || || ||||||| ||| | |||||||| || | ||||  ||||| | ||||| ||| ||  |||||| | ||||||||| ||||  ||    
T  28537494 acccaaatgggcggcaggctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccgt 28537395  T
Q  188 tctatctcatctaagcgttcttgggta 214  Q
    || |||||||||||||| |||||||||    
T  28537394 tccatctcatctaagcgctcttgggta 28537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 125
Target Start/End: Original strand, 11486725 - 11486818
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaac 125  Q
    ||||| || ||| ||| ||||||||||| | |||||||||  | |||| |||| |||||||||||| || |||||||| ||||| | |||||||    
T  11486725 taaaccgggtatcctccgcgcgcaactgtagagactaatctcttgagcattgtggaacccaaatgggcggcaagctcttcttaagagttttaac 11486818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 24172352 - 24172291
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctc 110  Q
    |||||||||||||||||||||||| |||||| |||| | | |||| ||| || |||||||||    
T  24172352 gcgcgcaactgcatagactaatccttcgagcattgtgggatccaagtgggcggcaagctctc 24172291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 213
Target Start/End: Original strand, 21747145 - 21747201
Alignment:
Q  157 caggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    |||||||||||| ||||||||| ||||  |||| ||||||||||| || ||||||||    
T  21747145 caggaccttggttaagttagaagagacccgttccatctcatctaaacgctcttgggt 21747201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 16756225 - 16756061
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||  |||||||||| |||||| |||| | ||||||||| |||||| ||||||| ||| | |||||||||| || ||||  ||| | |  |    
T  16756225 gcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgcacgacatgctctccctaagagttttaacgcttctgcatgcccaatgctgaa 16756126  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||||||| ||| |||||||| ||| ||||| |||   |||| |||||||||||||| ||||||||    
T  16756125 ttcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgctcttgggt 16756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 217
Target Start/End: Complemental strand, 10750744 - 10750573
Alignment:
Q  45 ctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggt 144  Q
    ||||||||||||||| | |||||||||| |||| | ||||   | |||||||| || ||||| | ||| || | ||||||||||| |  |||  |||| |    
T  10750744 ctctgcgcgcaactgtaaagactaatccctcgaacattgtgcgatccaaatgggcggcaagcgcacct-aagagttttaacgctgatgtatgcccaagat 10750646  T
Q  145 tagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtatat 217  Q
    ||||||| ||| || ||||||||| || ||||||||||| ||||  |||||||||||||| |||||| |||||    
T  10750645 tagattcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaagcgctcttggttatat 10750573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 46864235 - 46864155
Alignment:
Q  48 tgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgct 128  Q
    |||||||||||||| |||||||||| |||| | ||||  |||||||||||||| |||| ||||| ||| ||||||||||||    
T  46864235 tgcgcgcaactgcagagactaatccctcgaacattgtgaaacccaaatggacggcaagttctccctaagaattttaacgct 46864155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 213
Target Start/End: Complemental strand, 45806280 - 45806215
Alignment:
Q  148 attcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    |||| |||||||||||||||| ||| ||||| ||||  ||||||||||||||||||| || |||||    
T  45806280 attcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaagcgctcctgggt 45806215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 131
Target Start/End: Original strand, 42297423 - 42297522
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    |||||| | ||| ||| ||||||||||||  |||||||||| |||||| ||||   ||||||||||||| ||  |||||| ||| | |||||||||||||    
T  42297423 taaactaggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgagacccaaatggacggcagactctccctaagagttttaacgctgct 42297522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 6607777 - 6607858
Alignment:
Q  134 atgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggtat 215  Q
    |||| ||| ||||||||| |||||| |||| || | ||||||||| ||||| ||   ||| |||||||||||||||||||||    
T  6607777 atgtccaaagttagattcgaactcaagaccatgattaagttagaagagactcgtgtcatcccatctaagcgttcttgggtat 6607858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 214
Target Start/End: Complemental strand, 22022259 - 22022098
Alignment:
Q  53 gcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattca 152  Q
    ||||||||  |||||||||| ||||   |||| | ||||||||||  | |||| ||||| ||| | |||||| |||||| ||||  ||||| | |||||     
T  22022259 gcaactgcggagactaatccctcgaatattgtgggacccaaatgggtggcaagttctccctaagagttttaatgctgctgcatgcccaaggctggattcg 22022160  T
Q  153 aactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggta 214  Q
    ||| ||  ||||| || ||| ||||| |||| ||||| ||||||||||| || |||||||||    
T  22022159 aacccacaaccttagttaagctagaagagacctgttccatctcatctaaacgctcttgggta 22022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 36806771 - 36806706
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatgg 97  Q
    ||||| || ||| ||| ||| ||||||||| |||||||||| |||||| |||| ||||||||||||    
T  36806771 taaaccgggtatcctccgcgtgcaactgcagagactaatccctcgagcattgtggaacccaaatgg 36806706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 165
Target Start/End: Original strand, 9780971 - 9781103
Alignment:
Q  33 aaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgcta 132  Q
    ||||||| ||||||| |||| ||||| |  | |||||||| |||||| |||| | |||||||||| || |   |||||| ||| | |||||||||||||     
T  9780971 aaactgggtattctccgcgcccaactacggatactaatccctcgagcattgtgggacccaaatgggcggccgactctccctaagagttttaacgctgctg 9781070  T
Q  133 catgttcaaggttagattcaaactcaggacctt 165  Q
    ||||  ||||| | ||||| |||||| ||||||    
T  9781071 catgcccaaggctggattcgaactcaagacctt 9781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 9e-17; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 119 - 203
Target Start/End: Complemental strand, 12411221 - 12411137
Alignment:
Q  119 ttttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagc 203  Q
    ||||||||||||| ||||  ||||| | ||||| |||||||||||||||| ||||||||| |||| ||||| |||||||||||||    
T  12411221 ttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttagaagagacctgttccatctcatctaagc 12411137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 28099403 - 28099252
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    |||||||| ||| ||| || |||||||||  |||||||||| |||||| || | |||| ||||||||||||||  ||||| ||||| ||||||| |||||    
T  28099403 taaactgggtatcctccgctcgcaactgcggagactaatccctcgagcattatggaactcaaatggacgacaaattctccctaaaagttttaacactgct 28099304  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagac 183  Q
     ||||  ||||| | ||||| ||| ||||||||| || ||| ||||| ||||    
T  28099303 gcatgcccaaggctggattcgaacccaggaccttagttaaggtagaagagac 28099252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 55 - 213
Target Start/End: Complemental strand, 25084171 - 25084013
Alignment:
Q  55 aactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaa 154  Q
    |||||||||||||||||  |||||| |||| ||||  ||||||| |||||||||||| ||| | |||||||  |||| ||||| ||||  |  |||| ||    
T  25084171 aactgcatagactaatctctcgagcattgtggaacttaaatggatgacaagctctccctaagagttttaacattgctgcatgtccaagactgaattcgaa 25084072  T
Q  155 ctcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    |||| ||| ||| | ||| ||||| ||||||||   |||||||||||| ||||||||||    
T  25084071 ctcaagactttgattaagctagaagagacttgtgtcatctcatctaagtgttcttgggt 25084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 109
Target Start/End: Complemental strand, 6062182 - 6062125
Alignment:
Q  52 cgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctct 109  Q
    |||||||||  ||||||||||||||| | |||||| ||||||||| ||| ||||||||    
T  6062182 cgcaactgcgaagactaatccatcgaacgttgtaggacccaaatgaacggcaagctct 6062125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 137
Target Start/End: Complemental strand, 24450076 - 24449987
Alignment:
Q  48 tgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgt 137  Q
    ||||||||||| || |||||||||  || || ||| | |||| |||||||  | ||| |||||||||| |||||||| ||||||||||||    
T  24450076 tgcgcgcaactccaaagactaatctctcaagtcttatggaactcaaatgggtggcaaactctccttaagaattttaatgctgctacatgt 24449987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 28933256 - 28933119
Alignment:
Q  74 tcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagt 173  Q
    |||||| |||| |||||||||||| || ||| |||||  ||| |||||||||| || | |||||  |||| |  ||||||| ||||||| || || |||     
T  28933256 tcgagcattgtggaacccaaatgggcggcaaactctctctaagaattttaacgatgttgcatgtctaaggctgaattcaaaatcaggactttagttaaga 28933157  T
Q  174 tagaaaagacttgttctatctcatctaagcgttcttgg 211  Q
    || || |||||  ||||||||||||||| || ||||||    
T  28933156 taaaagagactcattctatctcatctaaacgctcttgg 28933119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 206
Target Start/End: Original strand, 31868689 - 31868762
Alignment:
Q  133 catgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgtt 206  Q
    |||||||||||||  |||| ||||||  |||||||| || |||||| |||||| | |||||||||||| |||||    
T  31868689 catgttcaaggttgaattcgaactcaaaaccttggttaaattagaagagacttatactatctcatctacgcgtt 31868762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 12836878 - 12836982
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| |||||||||||   |||||||||| || ||| |||| | |||||||||| || | |||||||| ||| | |||||||||||||    
T  12836878 taaaccgggtatcctccgcgcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccctaagagttttaacgctgct 12836977  T
Q  132 acatg 136  Q
     ||||    
T  12836978 gcatg 12836982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 213
Target Start/End: Complemental strand, 10592070 - 10591906
Alignment:
Q  49 gcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttaga 148  Q
    ||||||||||||| |||||||||| |||||| |||| | || ||||||| || ||  |||||| ||| | ||||||| ||||| ||||  ||||| | ||    
T  10592070 gcgcgcaactgcagagactaatccctcgagcattgtgggactcaaatgggcggcagactctccctaagagttttaacactgctgcatgcccaaggctgga 10591971  T
Q  149 ttcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcgttcttgggt 213  Q
    ||| ||| |||||||||||| ||  ||||| ||||  |||| |||||||||||| | ||||||||    
T  10591970 ttcgaacccaggaccttggttaatctagaagagacccgttccatctcatctaagtgctcttgggt 10591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 2798340 - 2798442
Alignment:
Q  76 gagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagtta 175  Q
    |||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||||||| |||| |||||||| ||||| ||| ||| |||||||| ||| ||    
T  2798340 gagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagcta 2798439  T
Q  176 gaa 178  Q
    |||    
T  2798440 gaa 2798442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 2804507 - 2804609
Alignment:
Q  76 gagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagtta 175  Q
    |||| |||||||| |||||||| ||  ||||||||| ||||| ||||||||||||| |||| |||||||| ||||| ||| ||  |||||||| ||| ||    
T  2804507 gagcattgtagaaaccaaatgggcggtaagctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagcta 2804606  T
Q  176 gaa 178  Q
    |||    
T  2804607 gaa 2804609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 5123479 - 5123583
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||| |||||| |||| | |||||||||| || || ||||||| ||| | ||||||| |||||    
T  5123479 taaacagggtatcctccgcgcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 5123578  T
Q  132 acatg 136  Q
     ||||    
T  5123579 gcatg 5123583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 28023497 - 28023606
Alignment:
Q  105 gctctccttaaaaattttaacgctgctacatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagacttgttctatctcatctaagcg 204  Q
    ||||||| ||||| ||||||| || ||| |||   |||| | ||||| |||||||||| ||||| ||| ||||| |||   |||| ||||||||||||||    
T  28023497 gctctccctaaaagttttaacactactatatgcctaaggctggattcgaactcaggacattggttaagctagaagagatccgttccatctcatctaagcg 28023596  T
Q  205 ttcttgggta 214  Q
     |||||||||    
T  28023597 ctcttgggta 28023606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 141
Target Start/End: Original strand, 35940807 - 35940895
Alignment:
Q  52 cgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgctacatgttcaa 141  Q
    |||||||||| |||||||| | |||| |||||||||||  ||||||||| |||  ||| ||||||| |||||||| || |||||| ||||    
T  35940807 cgcaactgcagagactaattc-tcgaaccttgtagaacttaaatggacggcaaattcttcttaaaagttttaacgttgttacatgctcaa 35940895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 183
Target Start/End: Complemental strand, 26491 - 26340
Alignment:
Q  32 taaactggatattctctgcgcgcaactgcatagactaatccatcgagccttgtagaacccaaatggacgacaagctctccttaaaaattttaacgctgct 131  Q
    ||||| || ||| ||| ||||||||||||  |||||||||  |||| | |||| | |||||||||| || || ||||||| ||| | ||||||| |||||    
T  26491 taaaccgggtatcctccgcgcgcaactgcggagactaatctctcgaacattgtgggacccaaatgggcggcaggctctccctaagagttttaacactgct 26392  T
Q  132 acatgttcaaggttagattcaaactcaggaccttggtcaagttagaaaagac 183  Q
     ||||  ||||| | ||||| ||| |||||||||||| ||| ||||| ||||    
T  26391 gcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagac 26340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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