View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_65 (Length: 244)
Name: NF6698_high_65
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_65 |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 20 - 223
Target Start/End: Complemental strand, 23485728 - 23485532
Alignment:
| Q |
20 |
gagagtgaccatgacaaacaagaggtaccgtaacttttttcttttccatttcttgtaaaatctcacaaataatttcttgattctttgaactattgatagt |
119 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23485728 |
gagagtgaccgtgacaaacaagaggtaccgtaacttttttcttttccatttcttgtaaaatctcacaaataatttcttgattctttgaactattgatagt |
23485629 |
T |
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| Q |
120 |
atgaaaccctaaaagcaaaagaagaacaacaacaacaccactaataacaagaaatgaaatgattgatcgaaacggtaacggcggtgttacgaaaagtaac |
219 |
Q |
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|||||||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||| |
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| T |
23485628 |
atgaaaccctaaaagcaaaagaagaagaacaacaa---cactactaacaagaaatgaaatgatt----gaaacagtaacggcggtgttacgaaaagtaac |
23485536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 120 - 223
Target Start/End: Complemental strand, 35713046 - 35712948
Alignment:
| Q |
120 |
atgaaaccctaaaagcaaaagaagaacaacaacaacaccactaataacaa-gaaatgaaatgattgatcgaaacggtaacggcggtgttacgaaaagtaa |
218 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35713046 |
atgaaaccctaaaagcaaaagaagaacaacaaca------ctaataacaaagaaatgaaaggattgatcgaaacggtaacggcggtgttacgaaaagtaa |
35712953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 223
Target Start/End: Original strand, 13385148 - 13385246
Alignment:
| Q |
120 |
atgaaaccctaaaagcaaaagaagaacaacaacaacaccactaataacaa-gaaatgaaatgattgatcgaaacggtaacggcggtgttacgaaaagtaa |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
13385148 |
atgaaaccctaaaagcaaaagaagaacaacaaca------ctaataacaaagaaatgaaatgatttatcgaaacggtaacggtggtgttacgaaaagtaa |
13385241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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