View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_66 (Length: 244)
Name: NF6698_high_66
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_66 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 19611569 - 19611801
Alignment:
| Q |
1 |
actgattgtatattggtacttagtagagcttttaattcacaagttgaaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611569 |
actgattgtatattggtacttagtagagcttttaattcacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
19611668 |
T |
|
| Q |
101 |
ttatagggtaaaatattggtggtagggagttaaaaagtgtttcaagttcctatcagtatgtttcaagtatatgtctaaagacttgctaaatttgatacaa |
200 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19611669 |
ttatagggtaaaatattggtggcagggagttaaaaagtgtttcaagttcctatcagtatgtttcaagtatatgtctaaagacttgctaaatttgatacaa |
19611768 |
T |
|
| Q |
201 |
gcatagcatttgaaatagaatagagatgatgtc |
233 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
19611769 |
gcatagcatttgaaatagaatagagatgatgtc |
19611801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 23362008 - 23362148
Alignment:
| Q |
1 |
actgattgtatattggtacttagtagagcttttaattcacaagttgaaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23362008 |
actgattgtatattggtacttagtagagcttttaattcacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
23362107 |
T |
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| Q |
101 |
ttatagggtaaaatattggtggtagggagttaaaaagtgtt |
141 |
Q |
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| T |
23362108 |
ttatagggtaaaatattggtggcagggagttaaaaagtgtt |
23362148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 7600323 - 7600460
Alignment:
| Q |
1 |
actgattgtatattggtacttagtagagcttttaattcacaagttgaaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7600323 |
actgattgtatattggtacttagtagagcttttaattcacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
7600422 |
T |
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| Q |
101 |
ttatagggtaaaatattggtggtagggagttaaaaagt |
138 |
Q |
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| T |
7600423 |
ttatagggtaaaatattggtggcagggagttaaaaagt |
7600460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 28462199 - 28462062
Alignment:
| Q |
1 |
actgattgtatattggtacttagtagagcttttaattcacaagttgaaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28462199 |
actgattgtatattggtacttagtagagcttttaattcacaagttggaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
28462100 |
T |
|
| Q |
101 |
ttatagggtaaaatattggtggtagggagttaaaaagt |
138 |
Q |
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| T |
28462099 |
ttatagggtaaaatattggtggcagggagttaaaaagt |
28462062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 45402420 - 45402560
Alignment:
| Q |
1 |
actgattgtatattggtacttagtagagcttttaattcacaagttgaaaagttgtttcttggcagaggaggaaaaataggtgaactagaattttctcaga |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||||| | |
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| T |
45402420 |
actgattgtatattggtacttagtagagcttttaattcacaagttggaaagttgtttcttggcagaggaggtaaaataggtgaactagaaatttctcata |
45402519 |
T |
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| Q |
101 |
ttatagggtaaaatattggtggtagggagttaaaaagtgtt |
141 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |
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| T |
45402520 |
ttatagggtaaaatattggtggcagggagttaaaaagtgtt |
45402560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 138 - 233
Target Start/End: Original strand, 45402755 - 45402850
Alignment:
| Q |
138 |
tgtttcaagttcctatcagtatgtttcaagtatatgtctaaagacttgctaaatttgatacaagcatagcatttgaaatagaatagagatgatgtc |
233 |
Q |
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| T |
45402755 |
tgtttcaagttcctatcaatatgtttcaagtatatgtctaaagacttgctaaatttgaaacaagcatagcatttgaaatagaatagagatgatgtc |
45402850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 18812156 - 18812229
Alignment:
| Q |
5 |
attgtatattggtacttagtagagcttttaattcacaagttgaaaagttgtttcttggcagaggaggaaaaata |
78 |
Q |
| |
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|||||||||||||| ||||||||| ||||||||| || | |||| |||| |||||||| || ||| |||||||| |
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| T |
18812156 |
attgtatattggtatttagtagaggttttaattcccatgatgaatagttttttcttggtagtggatgaaaaata |
18812229 |
T |
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