View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_7 (Length: 662)
Name: NF6698_high_7
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 1 - 643
Target Start/End: Complemental strand, 35819437 - 35818791
Alignment:
| Q |
1 |
tatcatagacaaatgtctcttgcattggagatcatttgaagttgagggtgctagtactaatgttttcgatcgtatcacccaaactattgaccatgcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819437 |
tatcatagacaaatgtctcttgcattggagatcatttgaagttgagggtgctagtactaatgttttcgatcgtatcacccaaactattgaccatgcaatt |
35819338 |
T |
|
| Q |
101 |
aaggtatgaaaagcaaaacttgctcatgctaatgctctttttcttgctccttttcctaacatgtcacttcaagtcactgatatttccatttggacttcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819337 |
aaggtatgaaaagcaaaacttgctcatgctaatgctctttttcttgctccttttcctaacatgtcacttcaagtcactgatatttccatttggacttcag |
35819238 |
T |
|
| Q |
201 |
acccaggatatcaacaatgcttggcctattggttatcccatgcctccaaacttttcttgttactcaaagcaagcggttcttatggaatggctccacaatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819237 |
acccaggatatcaacaatgcttggcctattggttatcccatgcctccaaacttttcttgttactcaaagcaagcggttcttatggaatggctccacaatg |
35819138 |
T |
|
| Q |
301 |
ccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaacatagcttctgttttgaatagattaattcccattgaaaagctttcatttttc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35819137 |
ccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaacatagcttctgttttgaatagattaattcccattgaaaagctttcatttttc |
35819038 |
T |
|
| Q |
401 |
aaataatgtgaaataacaaaaccataaatggaatctaagtaaatattgttttattgaaaagattgcagacaacaatatgtgtctacac--gcgcgcgcgc |
498 |
Q |
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| T |
35819037 |
agataatgtgaaataacaaaaccataaatggaatctaagtaaatattgttttattgaaaagattgcagacaacaatatgtgtctacacgtgcgtgcgcgc |
35818938 |
T |
|
| Q |
499 |
aca--catataataacacgatacaaatctacagaaatggaaacaaggtcactcctaattctggaatgatttccttttgcagtctaaatcagggttcttcg |
596 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35818937 |
acacgcatataataacacgatacaaatctacagaaatggaaacaaggtcactcctaattctggaatgatttccttttgcagtctaaatcagggttcttcg |
35818838 |
T |
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| Q |
597 |
tgataacttcaagaaagaaatttctccattacttggattatgcatcc |
643 |
Q |
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| T |
35818837 |
tgataacttcaagaaagaaatttctccattacttggattatgcatcc |
35818791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 47701394 - 47701439
Alignment:
| Q |
1 |
tatcatagacaaatgtctcttgcattggagatcatttgaagttgag |
46 |
Q |
| |
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||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
47701394 |
tatcatatacaaatgcctcttgcattggagatcatttgaagttgag |
47701439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 283 - 348
Target Start/End: Original strand, 47701684 - 47701749
Alignment:
| Q |
283 |
tggaatggctccacaatgccactgttcttcatcagcagccctgtttgggaggatgactcaagtaaa |
348 |
Q |
| |
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|||||||||||| ||| ||| | ||||||| |||||| ||||||||||||||||||| |||||||| |
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| T |
47701684 |
tggaatggctcctcaacgccgccgttcttcctcagcaaccctgtttgggaggatgacacaagtaaa |
47701749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 593 - 643
Target Start/End: Original strand, 47701993 - 47702043
Alignment:
| Q |
593 |
ttcgtgataacttcaagaaagaaatttctccattacttggattatgcatcc |
643 |
Q |
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|||| |||||||| ||||||||||||||||| || |||||| ||||||||| |
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| T |
47701993 |
ttcgagataacttgaagaaagaaatttctcccttgcttggactatgcatcc |
47702043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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