View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6698_high_77 (Length: 234)
Name: NF6698_high_77
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_77 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 16 - 184
Target Start/End: Complemental strand, 46795574 - 46795406
Alignment:
| Q |
16 |
tttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795574 |
tttggtgttactagtagttttccaattccaaattttgttgtgacagagcagaaacaaccagcaacagttataggaggaaagaaagataggcacagtaaga |
46795475 |
T |
|
| Q |
116 |
ttcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttg |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46795474 |
ttcacacatcacagggtttgagagacagaagggtaagattgtcaagtgaaatagcaagaaagttctttg |
46795406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 6032037 - 6032092
Alignment:
| Q |
94 |
aagaaagataggcacagtaagattcacacatcacagggtttgagagacagaagggt |
149 |
Q |
| |
|
|||||||| ||||| || |||||||||||||| || || ||||||||||||||||| |
|
|
| T |
6032037 |
aagaaagacaggcatagcaagattcacacatctcaagggttgagagacagaagggt |
6032092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University