View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_78 (Length: 234)
Name: NF6698_high_78
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_78 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 1e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 218
Target Start/End: Original strand, 41702290 - 41702488
Alignment:
| Q |
20 |
agtactcctttttataatcgctttcaattatcaccttttcataaactaaaatcactttctgagtttcttctgatttttagcaattcccattatcagnnnn |
119 |
Q |
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| T |
41702290 |
agtactcctttttataatcgctttcaattatcactttttcataaactaaaatcactttctgagtttcttctgatttttagcaaatcccattatcagtttt |
41702389 |
T |
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| Q |
120 |
nnnnnnnnacataaactcacttttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaaactgtgtcaccaccatatt |
218 |
Q |
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| T |
41702390 |
tcttttttacctaaactcacttttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaacctgtgtcaccaccatatt |
41702488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 214
Target Start/End: Complemental strand, 41470282 - 41470208
Alignment:
| Q |
140 |
ttttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaactgaaactgtgtcaccacca |
214 |
Q |
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|||||||| ||||||||||||||||| || |||||||| |||||| |||||||||||||| | | |||||||||| |
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| T |
41470282 |
ttttttcttctaaagtttccaccttttcagcatatcatcaacatgcaacccaaaactgaacccgggtcaccacca |
41470208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 194
Target Start/End: Complemental strand, 41500036 - 41499983
Alignment:
| Q |
141 |
tttttctactaaagtttccacctttccaccatatcatgaacatggaacccaaaa |
194 |
Q |
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|||||||||||||||||||| ||||| |||||||||||||||| ||||||||| |
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| T |
41500036 |
tttttctactaaagtttccaactttcgaccatatcatgaacattcaacccaaaa |
41499983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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