View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_80 (Length: 229)
Name: NF6698_high_80
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_80 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 229
Target Start/End: Complemental strand, 1654554 - 1654336
Alignment:
| Q |
11 |
caatgaagtaatcggtaacggaaagtgaaccttgtttcaaaggattgatgatggattagcaacatgaatgtgatcaaacatggaaaattgttcctttaac |
110 |
Q |
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| T |
1654554 |
caatgaagtaatcagtaacggaaagtgaaccttgtttcaaagaattgatgatggattagcaacatgaatgtgatcaaacttggaaaattgttcctttaac |
1654455 |
T |
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| Q |
111 |
tctttccaaacatcaacaacattcttattaaataagactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatttatacaatatgt |
210 |
Q |
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| T |
1654454 |
tctttccaaacatcaacaacattcttaataaataagactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatttatacaatatgt |
1654355 |
T |
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| Q |
211 |
gtagttaatttctctttat |
229 |
Q |
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| T |
1654354 |
gtagttaatttctctttat |
1654336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 28062364 - 28062168
Alignment:
| Q |
14 |
tgaagtaatcggtaacggaaagtgaaccttgttt-caaaggattgatgatgga-------ttagcaacatgaatgtgatcaaacatggaaaattgttcct |
105 |
Q |
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| T |
28062364 |
tgaagtaatcagtaacatatagtgaaccttgttttcaaagaattgatgctggaacgaagcttagcaatacgaatgtgatcagacttggaaaattgtctct |
28062265 |
T |
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| Q |
106 |
ttaactctttccaaacatcaacaacattcttattaaata----agactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatt |
198 |
Q |
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| T |
28062264 |
tcaattctttccaaacatcaacaacattctaaataaatatgatagattgtgcaatctgagaactaacataattcgcgatctatgaatatataagatt |
28062168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 28072789 - 28072593
Alignment:
| Q |
14 |
tgaagtaatcggtaacggaaagtgaaccttgttt-caaaggattgatgatgga-------ttagcaacatgaatgtgatcaaacatggaaaattgttcct |
105 |
Q |
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| T |
28072789 |
tgaagtaatcagtaacatatagtgaaccttgttttcaaagaattgatgctggaacgaagcttagcaatacgaatgtgatcagacttggaaaattgtctct |
28072690 |
T |
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| Q |
106 |
ttaactctttccaaacatcaacaacattcttattaaata----agactgaacaatctgagaactaaccgagttcacgatccatgaatgaataagatt |
198 |
Q |
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| T |
28072689 |
tcaattctttccaaacatcaacaacattctaaataaatatgatagattgtgcaatctgagaactaacataattcgcgatctatgaatatataagatt |
28072593 |
T |
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