View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_high_86 (Length: 218)
Name: NF6698_high_86
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_high_86 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 31309318 - 31309504
Alignment:
| Q |
19 |
caaattgaaccagatcgataacccagaaactggatgatcaagaactcattgaacatcatcaaacccataaacctcatcgaacactgccgaaatcttcaat |
118 |
Q |
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| T |
31309318 |
caaattgaaccagatcgataacccagaatctggatgatcaagaactcattgaacatcatcaaacccataaacctcatcgaacactgccgaaatcttcaat |
31309417 |
T |
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| Q |
119 |
ttgtcgccgccgccgaatttcaccacctgctatcgtattttcaaagtaacccttctctttatccttcacaatttctgttatattctt |
205 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31309418 |
ttgtcgccgccgccgaatttcagcacctgctatcgtattttcaaagtaacccttctctttatccttcacaatttctgttattttctt |
31309504 |
T |
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