View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_high_9 (Length: 650)

Name: NF6698_high_9
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_high_9
NF6698_high_9
[»] chr1 (5 HSPs)
chr1 (177-631)||(31879076-31879532)
chr1 (18-91)||(31878878-31878951)
chr1 (324-412)||(7759201-7759289)
chr1 (337-408)||(37506123-37506194)
chr1 (337-418)||(15699121-15699202)
[»] chr8 (4 HSPs)
chr8 (337-418)||(31271020-31271101)
chr8 (330-418)||(9300149-9300237)
chr8 (337-401)||(39482614-39482678)
chr8 (337-418)||(31231729-31231810)
[»] chr7 (8 HSPs)
chr7 (324-418)||(32346094-32346188)
chr7 (324-418)||(3178246-3178340)
chr7 (324-412)||(30865960-30866048)
chr7 (337-418)||(9785994-9786075)
chr7 (337-418)||(28202351-28202432)
chr7 (337-418)||(41506107-41506188)
chr7 (337-398)||(49101669-49101730)
chr7 (337-401)||(30546414-30546478)
[»] chr4 (2 HSPs)
chr4 (337-418)||(34360654-34360735)
chr4 (324-424)||(38405137-38405237)
[»] chr2 (5 HSPs)
chr2 (324-417)||(39691476-39691569)
chr2 (337-417)||(15359121-15359201)
chr2 (358-418)||(16463709-16463769)
chr2 (324-392)||(19937371-19937439)
chr2 (324-396)||(36354498-36354570)
[»] chr5 (5 HSPs)
chr5 (328-418)||(6754019-6754109)
chr5 (336-418)||(8725042-8725124)
chr5 (324-418)||(21060616-21060710)
chr5 (337-418)||(27542794-27542875)
chr5 (324-418)||(1248637-1248731)
[»] chr3 (6 HSPs)
chr3 (372-422)||(42278699-42278749)
chr3 (324-418)||(37695701-37695795)
chr3 (337-418)||(45710849-45710930)
chr3 (324-408)||(19822997-19823081)
chr3 (337-401)||(27471334-27471398)
chr3 (331-383)||(52290886-52290938)
[»] chr6 (3 HSPs)
chr6 (337-418)||(30716899-30716980)
chr6 (327-406)||(24983495-24983574)
chr6 (324-406)||(11655992-11656074)


Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 177 - 631
Target Start/End: Original strand, 31879076 - 31879532
Alignment:
Q  177 ttaggagtttttaatttctcaaaattacagtgtaagtcgaagtctttccactaaattgaaagaaatgtttgtatatgaataatatgaatggattccattt 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||| |||||||||    
T  31879076 ttaggagtttttaatttctcaaaattacagtgtaagtcgaagtctttccactaaatcgaaagaaatgattgtatgtgaataatatgaatgaattccattt 31879175  T
Q  277 taataattgtcattttgaaatatcactgcaatannnnnnnnnnnnnncattaatatatcattatttattgaattttactccactttactactcctctaac 376  Q
    ||||||||||||||||||||||||| |||||||              ||||||||||| |||||||||||||||||||||||| ||| ||||||||||||    
T  31879176 taataattgtcattttgaaatatcaatgcaatatttttattttttt-cattaatatattattatttattgaattttactccacgttattactcctctaac 31879274  T
Q  377 tataattcatatgagtgttttagtatatgatattaaatttacgatttactactaaaatcaacacaactaataannnnnnnnn---aaaatcacacacaat 473  Q
    |||||||||||||| ||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||            ||||||| |||||||    
T  31879275 tataattcatatgaatgtttcagtacatgatattaaatttacgatttactattaaaatcaacacaactaataatttttttttttaaaaatcatacacaat 31879374  T
Q  474 ctttaaaaagacaattataacgagacggagagagtaatatataatgtatgtatcataattaatgtcttgaaaaacattttttaatatatctggatgaggg 573  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31879375 ctttgaaaagacaattataatgagacggagagagtaatatataatgtatgtgtcataattaatgtcttgaaaaacatttcttaatatatctggatgaggg 31879474  T
Q  574 agaaataattcacactttcacagtaagaatgacttgtagaaattgaaaatacattact 631  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31879475 agaaataattcacactttcacagtaagaatgacttgtagaaattgaaaatacattact 31879532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 31878878 - 31878951
Alignment:
Q  18 acatcaaaggtggcagctttcgcattttgattggagagataagttcaagctttcataatcctatgagaaataac 91  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31878878 acatcaaaggtgacagctttcgcattttgattggagagataagttcaagctttcataatcatatgagaaataac 31878951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 7759201 - 7759289
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaa 412  Q
    ||||| |||| | ||||||||||||||| | || |||| |||| ||| ||||||| |||| ||| |||| |||||||| ||||||||||    
T  7759201 cattattatacccttatttattgaatttcattcaacttaactattccactaactacaattaataagagtattttagtaaatgatattaa 7759289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 337 - 408
Target Start/End: Original strand, 37506123 - 37506194
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgata 408  Q
    ||||||||||||||| | || |||| |||||||| ||||||| |||| |||  |||||||||||| ||||||    
T  37506123 ttatttattgaatttcattcaacttaactactccactaactacaattaataaaagtgttttagtaaatgata 37506194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 15699121 - 15699202
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||| || |  | |||| |||||||| ||||||| |||| ||| | ||||||||||| |||||||||| |||||    
T  15699121 ttatttattgaacttcatccaacttaactactccactaactacaattaataagggtgttttagtaaatgatattaattttac 15699202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 31271020 - 31271101
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||||||||  | |||| |||||||| |||||||||||| ||| |||| ||||||||||||||||||| |||||    
T  31271020 ttatttattgaattttatccaacttaactactccactaactataattaataagagtattttagtatatgatattaattttac 31271101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 330 - 418
Target Start/End: Complemental strand, 9300237 - 9300149
Alignment:
Q  330 tatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||| ||||||||||||||| | || |||| |||||||| ||||||| |||| ||| | ||||||||||| ||| |||||| |||||    
T  9300237 tatatccttatttattgaatttcattcaacttaactactccactaactaaaattaataagggtgttttagtaaatgctattaattttac 9300149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 39482614 - 39482678
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagta 401  Q
    ||||||||||||||| | ||||||| |||| ||| |||||||||||| ||| | |||||||||||    
T  39482614 ttatttattgaatttcattccacttaactagtccactaactataattaataagggtgttttagta 39482678  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 31231729 - 31231810
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||| ||||  | |||| |||||||| ||||||| |||| ||| | |||||| |||| |||||||||| |||||    
T  31231729 ttatttattgaactttatccaacttaactactccactaactacaattaataagggtgtttcagtaaatgatattaattttac 31231810  T

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Target: chr7 (Bit Score: 39; Significance: 0.000000000001; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 32346188 - 32346094
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||| |||| | ||||||||||||||| | || |||| |||||||| |||| ||||||| ||| |||| |||||||| |||||||||| |||||    
T  32346188 cattattatacccttatttattgaatttcattcaacttaactactccactaattataattaataagagtattttagtagatgatattaattttac 32346094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 3178340 - 3178246
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||| | ||||||||||||||| |  | |||| |||||||| ||||||| |||| |||   ||||||||||| |||||||||| |||||    
T  3178340 cattaatatacccttatttattgaatttcatccaacttaactactccactaactacaattaataaaggtgttttagtaaatgatattaattttac 3178246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 324 - 412
Target Start/End: Original strand, 30865960 - 30866048
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaa 412  Q
    ||||| |||||| ||||||||||||||| |    |||| |||||||| |||| ||||||| ||| |||| |||||||| ||||||||||    
T  30865960 cattattatatctttatttattgaatttcatctaacttaactactccactaattataattaataagagtattttagtaaatgatattaa 30866048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 9785994 - 9786075
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||||||||  | |||| |||||| | ||||||| |||| ||| | ||||||||||| |||| ||||| |||||    
T  9785994 ttatttattgaattttatccaacttaactacttcactaactacaattaataagcgtgttttagtaaatgaaattaattttac 9786075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 28202432 - 28202351
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||||||||||||| |  | ||||||||||||| ||||||| |||| ||| |  |||||||||| |||| ||||| |||||    
T  28202432 ttatttattgaatttcatccaactttactactccactaactacaattaataaggatgttttagtaaatgacattaattttac 28202351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Complemental strand, 41506188 - 41506107
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||||||||||||| |  | |||| |||||||| ||||||| |||| ||| ||||||||||||| ||| || ||| |||||    
T  41506188 ttatttattgaatttcatccaacttaactactccactaactacaattaataagagtgttttagtaaatgctactaattttac 41506107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 398
Target Start/End: Original strand, 49101669 - 49101730
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgtttta 398  Q
    ||||||||||||||| | || |||| |||||||| ||||||| |||| |||||||| |||||    
T  49101669 ttatttattgaatttcattcaacttaactactccactaactacaattaatatgagtatttta 49101730  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 401
Target Start/End: Complemental strand, 30546478 - 30546414
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagta 401  Q
    ||||||||||||||| ||||||||| ||||||||  |||||| |||| |||   |||||||||||    
T  30546478 ttatttattgaatttcactccacttaactactccaataactacaattaataaaggtgttttagta 30546414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 34360654 - 34360735
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||||||||||||||| || |||| |||||||| ||||||| |||| ||| ||||||||||||| ||| || ||| |||||    
T  34360654 ttatttattgaattttattcaacttaactactccactaactacaattaataagagtgttttagtaaatgctactaattttac 34360735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 424
Target Start/End: Complemental strand, 38405237 - 38405137
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttacgattt 423  Q
    ||||| |||| | ||||||||||||||| |  | |||| ||||| || ||||||| |||| ||| | || |||||||| |||||||||| ||||| ||||    
T  38405237 cattattatacctttatttattgaatttcatccaacttaactacaccactaactacaattaataagggtattttagtaaatgatattaattttaccattt 38405138  T
Q  424 a 424  Q
    |    
T  38405137 a 38405137  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 417
Target Start/End: Original strand, 39691476 - 39691569
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaattta 417  Q
    ||||| |||| | ||||||||||||||| | || ||||||||||||| ||||||  |||| ||| |||| |||||||| |||||||||| ||||    
T  39691476 cattattatacccttatttattgaatttcattcaactttactactccactaactgcaattaataagagtattttagtaaatgatattaatttta 39691569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 417
Target Start/End: Complemental strand, 15359201 - 15359121
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaattta 417  Q
    |||||||||||| || |  | |||| |||||||| ||||||| |||| ||| | ||||||||||| |||||||||| ||||    
T  15359201 ttatttattgaacttcatccaacttaactactccactaactacaattaataagggtgttttagtaaatgatattaatttta 15359121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 16463709 - 16463769
Alignment:
Q  358 actttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||||||||||| ||||||| |||| ||| | ||||||||||| |||||| ||| |||||    
T  16463709 actttactactccactaactacaattaataagggtgttttagtaaatgatactaattttac 16463769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 392
Target Start/End: Original strand, 19937371 - 19937439
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagt 392  Q
    ||||| |||| | ||||||||||||||||| || |||| |||||||| ||||||| |||| ||| ||||    
T  19937371 cattattatacctttatttattgaattttattcaacttaactactccactaactacaattaataagagt 19937439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 396
Target Start/End: Complemental strand, 36354570 - 36354498
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttt 396  Q
    ||||| |||| ||||||||||||||||| |  | |||| |||||||| ||||||| |||| ||| ||||||||    
T  36354570 cattattataccattatttattgaatttcatccaacttaactactccactaactacaattaataagagtgttt 36354498  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 418
Target Start/End: Original strand, 6754019 - 6754109
Alignment:
Q  328 aatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||| | ||||||||||||||| |  | |||| |||||||| ||||||| |||| ||| ||||||||||||| |||| ||||| |||||    
T  6754019 aatatacccttatttattgaatttcatccaacttaactactccactaactacaattaataagagtgttttagtaaatgacattaattttac 6754109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 336 - 418
Target Start/End: Complemental strand, 8725124 - 8725042
Alignment:
Q  336 attatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||||||| | || | || |||||||| ||||||| |||| ||| | ||||||||||| |||||||||| |||||    
T  8725124 attatttattgaatttcattcaagttaactactccactaactacaattaataagtgtgttttagtaaatgatattaattttac 8725042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 418
Target Start/End: Original strand, 21060616 - 21060710
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||| |||| |||||||||||||||||||  | |||| |||||||| ||||||| |||| ||| |||| |||||||| || ||| ||| |||||    
T  21060616 cattattataccattatttattgaattttatccaacttaactactccactaactacaattaataagagtattttagtaaataatactaattttac 21060710  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 27542794 - 27542875
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||||||||  | |||| |||||||| ||||||| |||| ||| |||| |||||||| ||| |||||| |||||    
T  27542794 ttatttattgaattttatccaacttaactactccactaactacaattaataagagtattttagtaaatggtattaattttac 27542875  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 1248731 - 1248637
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||| |||| | ||||| ||||||||||| || |||| |||||| | ||||||| |||| ||| | || |||||||| |||||||||| |||||    
T  1248731 cattattatacccttattaattgaattttattcaacttaactacttcactaactacaattaataagggtattttagtaaatgatattaattttac 1248637  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 42278699 - 42278749
Alignment:
Q  372 ctaactataattcatatgagtgttttagtatatgatattaaatttacgatt 422  Q
    |||||||||||| ||||||||||||||||| ||||| |||| |||||||||    
T  42278699 ctaactataattaatatgagtgttttagtaaatgatgttaattttacgatt 42278749  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 418
Target Start/End: Complemental strand, 37695795 - 37695701
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    ||||| |||| | ||||||||||||||| |    |||| |||||||| ||||||| |||| ||| | ||||||||||| |||||||||| |||||    
T  37695795 cattattatacccttatttattgaatttcatctaacttaactactccactaactacaattaataagggtgttttagtaaatgatattaattttac 37695701  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 45710849 - 45710930
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||| || |  | |||| |||||||| ||||||| |||| |||  |||||||||||| |||||||||| |||||    
T  45710849 ttatttattgaacttcatccaacttaactactccactaactacaattaataaaagtgttttagtaaatgatattaattttac 45710930  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 408
Target Start/End: Original strand, 19822997 - 19823081
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgata 408  Q
    |||||||||| | ||||||||||||||| |  | |||| |||| ||| ||||||| |||| ||| | ||||||||||| ||||||    
T  19822997 cattaatatacccttatttattgaatttcatccaacttaactattccactaactacaattaataagggtgttttagtaaatgata 19823081  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 401
Target Start/End: Original strand, 27471334 - 27471398
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagta 401  Q
    ||||||||||||||| | || |||| |||||||| |||  ||||||| ||| |||||||||||||    
T  27471334 ttatttattgaatttcattcaacttaactactccactacttataattaataagagtgttttagta 27471398  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 52290886 - 52290938
Alignment:
Q  331 atatcattatttattgaattttactccactttactactcctctaactataatt 383  Q
    ||||| |||||||||||| |||| || |||| |||||||| ||||||||||||    
T  52290886 atatccttatttattgaactttattcaacttaactactccactaactataatt 52290938  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 337 - 418
Target Start/End: Original strand, 30716899 - 30716980
Alignment:
Q  337 ttatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatgatattaaatttac 418  Q
    |||||||||||||||||  | ||||||||||||| ||||||| |||| ||| | |||||| |||| |||||| ||| |||||    
T  30716899 ttatttattgaattttatccaactttactactccactaactacaattaataagggtgtttaagtaaatgatactaattttac 30716980  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 406
Target Start/End: Complemental strand, 24983574 - 24983495
Alignment:
Q  327 taatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatga 406  Q
    ||||||| | ||||||||||||||| || | |||| |||||||| ||||||| |||| ||| | ||||||||||| ||||    
T  24983574 taatatacccttatttattgaatttcacccaacttaactactccactaactacaattaataagggtgttttagtaaatga 24983495  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 324 - 406
Target Start/End: Complemental strand, 11656074 - 11655992
Alignment:
Q  324 cattaatatatcattatttattgaattttactccactttactactcctctaactataattcatatgagtgttttagtatatga 406  Q
    ||||| |||| | ||||||||||||||| |  | ||||||||||||| ||||||| |||| ||| | ||||||||||| ||||    
T  11656074 cattattatacccttatttattgaatttcatccaactttactactccactaactacaattaataagggtgttttagtaaatga 11655992  T

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