View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_101 (Length: 226)

Name: NF6698_low_101
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_101
NF6698_low_101
[»] chr4 (28 HSPs)
chr4 (8-122)||(38698034-38698148)
chr4 (9-123)||(28589776-28589890)
chr4 (9-107)||(28590912-28591010)
chr4 (8-122)||(38695539-38695653)
chr4 (7-125)||(40723220-40723339)
chr4 (7-122)||(40724849-40724962)
chr4 (44-108)||(53435795-53435859)
chr4 (39-105)||(2162622-2162688)
chr4 (7-121)||(13533265-13533379)
chr4 (39-120)||(53432060-53432141)
chr4 (40-105)||(14524888-14524954)
chr4 (39-92)||(668412-668465)
chr4 (44-105)||(3921173-3921234)
chr4 (53-105)||(1190243-1190295)
chr4 (50-92)||(669693-669735)
chr4 (8-61)||(13531754-13531807)
chr4 (52-121)||(20625554-20625623)
chr4 (8-105)||(52963582-52963679)
chr4 (50-106)||(20620151-20620207)
chr4 (53-104)||(40792765-40792816)
chr4 (39-121)||(7053177-7053259)
chr4 (67-108)||(11115048-11115089)
chr4 (53-105)||(390230-390282)
chr4 (54-106)||(1588141-1588193)
chr4 (39-95)||(1829776-1829832)
chr4 (7-119)||(34326729-34326840)
chr4 (53-105)||(44501531-44501583)
chr4 (54-106)||(54865117-54865169)
[»] chr8 (26 HSPs)
chr8 (8-121)||(41743621-41743734)
chr8 (7-120)||(38696306-38696419)
chr8 (8-123)||(38697012-38697127)
chr8 (7-122)||(42877615-42877730)
chr8 (7-108)||(45394977-45395078)
chr8 (45-121)||(42878859-42878935)
chr8 (39-105)||(28418819-28418885)
chr8 (39-105)||(28420211-28420277)
chr8 (39-121)||(45437519-45437601)
chr8 (8-107)||(14840905-14841004)
chr8 (45-92)||(45396060-45396107)
chr8 (39-105)||(17702312-17702378)
chr8 (6-104)||(32798536-32798634)
chr8 (7-108)||(211605-211706)
chr8 (7-108)||(240550-240651)
chr8 (7-108)||(725228-725329)
chr8 (7-108)||(793905-794006)
chr8 (54-95)||(30787652-30787693)
chr8 (44-92)||(28735014-28735062)
chr8 (53-105)||(32797151-32797203)
chr8 (7-82)||(4810505-4810580)
chr8 (53-104)||(30786690-30786741)
chr8 (53-104)||(32693844-32693895)
chr8 (6-104)||(42872193-42872291)
chr8 (39-92)||(34504677-34504730)
chr8 (39-96)||(42870835-42870892)
[»] chr7 (14 HSPs)
chr7 (14-120)||(35105-35211)
chr7 (7-121)||(46201129-46201242)
chr7 (7-120)||(46202288-46202401)
chr7 (14-122)||(27750-27858)
chr7 (9-126)||(38539663-38539780)
chr7 (8-108)||(25533198-25533298)
chr7 (7-121)||(9662241-9662355)
chr7 (39-105)||(32602946-32603012)
chr7 (8-61)||(9660730-9660783)
chr7 (39-96)||(33779121-33779178)
chr7 (63-105)||(10942313-10942355)
chr7 (54-104)||(32256447-32256497)
chr7 (50-124)||(41328213-41328287)
chr7 (8-105)||(30333298-30333395)
[»] chr1 (21 HSPs)
chr1 (1-126)||(46318616-46318741)
chr1 (8-122)||(15746772-15746886)
chr1 (7-120)||(48097036-48097149)
chr1 (5-122)||(15743272-15743389)
chr1 (18-120)||(42244629-42244731)
chr1 (7-121)||(46467143-46467257)
chr1 (7-126)||(46468724-46468843)
chr1 (39-105)||(836230-836296)
chr1 (39-105)||(51042379-51042445)
chr1 (7-92)||(30535674-30535759)
chr1 (45-105)||(835258-835318)
chr1 (37-121)||(20064173-20064257)
chr1 (54-102)||(34352008-34352056)
chr1 (63-106)||(18818988-18819031)
chr1 (37-108)||(20069922-20069993)
chr1 (35-77)||(8027292-8027334)
chr1 (39-105)||(15071355-15071421)
chr1 (39-101)||(16123304-16123366)
chr1 (39-105)||(24499692-24499758)
chr1 (67-132)||(49619887-49619952)
chr1 (7-83)||(49802900-49802976)
[»] chr2 (19 HSPs)
chr2 (7-121)||(35904748-35904862)
chr2 (39-122)||(34147132-34147215)
chr2 (1-120)||(35903506-35903625)
chr2 (39-122)||(2276277-2276360)
chr2 (5-123)||(34148363-34148481)
chr2 (6-106)||(37956961-37957061)
chr2 (7-118)||(33995948-33996058)
chr2 (39-107)||(2277506-2277574)
chr2 (34-121)||(35061348-35061434)
chr2 (43-105)||(11547672-11547734)
chr2 (50-122)||(35061267-35061339)
chr2 (44-107)||(34512825-34512888)
chr2 (34-92)||(30749325-30749383)
chr2 (45-122)||(34513596-34513673)
chr2 (53-104)||(28561382-28561433)
chr2 (3-117)||(7753527-7753640)
chr2 (53-122)||(9474103-9474172)
chr2 (53-105)||(11315946-11315998)
chr2 (53-97)||(43033103-43033147)
[»] scaffold2071 (1 HSPs)
scaffold2071 (7-120)||(686-799)
[»] scaffold0011 (2 HSPs)
scaffold0011 (5-122)||(128594-128711)
scaffold0011 (7-122)||(127429-127544)
[»] scaffold1251 (1 HSPs)
scaffold1251 (39-122)||(1122-1205)
[»] chr6 (10 HSPs)
chr6 (9-108)||(16208534-16208633)
chr6 (46-125)||(7308491-7308570)
chr6 (37-103)||(7310291-7310357)
chr6 (39-105)||(233601-233667)
chr6 (53-105)||(232189-232241)
chr6 (53-105)||(6452562-6452614)
chr6 (35-107)||(12780538-12780610)
chr6 (35-107)||(12784717-12784789)
chr6 (54-106)||(35037145-35037197)
chr6 (55-104)||(7311777-7311826)
[»] chr5 (20 HSPs)
chr5 (7-122)||(1010369-1010484)
chr5 (7-118)||(8521255-8521366)
chr5 (6-121)||(8523750-8523865)
chr5 (5-121)||(32759051-32759167)
chr5 (7-120)||(9169584-9169698)
chr5 (39-117)||(32757826-32757904)
chr5 (14-125)||(26047806-26047917)
chr5 (8-120)||(1009182-1009294)
chr5 (54-105)||(34899003-34899054)
chr5 (52-123)||(23334017-23334088)
chr5 (37-104)||(30857814-30857881)
chr5 (50-108)||(23325922-23325980)
chr5 (53-126)||(10978330-10978403)
chr5 (39-107)||(11846308-11846376)
chr5 (53-105)||(24503197-24503249)
chr5 (53-96)||(22049187-22049230)
chr5 (53-104)||(24509087-24509138)
chr5 (54-105)||(34894162-34894213)
chr5 (39-121)||(11796566-11796648)
chr5 (53-106)||(22308850-22308903)
[»] chr3 (23 HSPs)
chr3 (6-122)||(3455629-3455745)
chr3 (8-102)||(28909611-28909705)
chr3 (39-105)||(37735319-37735385)
chr3 (7-117)||(20288229-20288339)
chr3 (7-108)||(43174711-43174812)
chr3 (39-105)||(18442265-18442331)
chr3 (39-105)||(19487339-19487405)
chr3 (39-105)||(50809434-50809500)
chr3 (39-105)||(50810871-50810937)
chr3 (39-105)||(50864927-50864993)
chr3 (39-105)||(50866362-50866428)
chr3 (39-96)||(42684898-42684955)
chr3 (53-105)||(3208497-3208549)
chr3 (67-123)||(20336693-20336749)
chr3 (53-104)||(3209982-3210033)
chr3 (44-122)||(43173882-43173960)
chr3 (53-102)||(12108034-12108083)
chr3 (53-94)||(53194921-53194962)
chr3 (39-84)||(55328342-55328387)
chr3 (39-79)||(5123383-5123423)
chr3 (53-105)||(38247527-38247579)
chr3 (53-105)||(40244200-40244252)
chr3 (57-105)||(41544675-41544723)
[»] scaffold0078 (1 HSPs)
scaffold0078 (39-101)||(18829-18891)
[»] scaffold0118 (1 HSPs)
scaffold0118 (39-105)||(43612-43678)
[»] scaffold0031 (1 HSPs)
scaffold0031 (53-104)||(123983-124034)
[»] scaffold0114 (1 HSPs)
scaffold0114 (50-126)||(38532-38608)


Alignment Details
Target: chr4 (Bit Score: 79; Significance: 4e-37; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 38698034 - 38698148
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||| || |||||||||||||||||||||    
T  38698034 gatttttttgacagacggagacacagttaaaggaccaaaacatgacttttattagatatgggaccaaaatgaaaattggaaattatttaaaggaccaaat 38698133  T
Q  108 gccctcttaagccta 122  Q
    | ||| |||||||||    
T  38698134 gacctattaagccta 38698148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 123
Target Start/End: Complemental strand, 28589890 - 28589776
Alignment:
Q  9 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    ||||||||||| |||||||||| | |||||| || ||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||    
T  28589890 atttatttgaccgacggagacataattaaagtaccaaaacataagttttaatacttatgggaccaaaatgaaaactgaaaattatttaagggatcaaatg 28589791  T
Q  109 ccctcttaagcctat 123  Q
     ||| |||| |||||    
T  28589790 acctattaaacctat 28589776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 28590912 - 28591010
Alignment:
Q  9 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||  ||| ||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||| ||| ||||||||||| |||||||||    
T  28590912 atttatttgaccaacgaagacacaattaaaggaccaaaacatgagttttattatttatgggaccaaaatgaaagctggaaattatttaagggaccaaat 28591010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 38695653 - 38695539
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    ||||| ||||| ||||||||| ||||||||||||| ||||||||| ||||||||  ||||||| ||||||||||| |||||||||||||| |||||||||    
T  38695653 gatttttttgatagacggagagacagttaaaggaccaaaacatgatttttattagatatgggatcaaaatgaaaattgaaaattatttaagggaccaaat 38695554  T
Q  108 gccctcttaagccta 122  Q
      ||| |||||||||    
T  38695553 aacctattaagccta 38695539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 125
Target Start/End: Complemental strand, 40723339 - 40723220
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactg-aaaattatttaaaggaccaa 105  Q
    ||||||||||||| |||||||| | |  ||| |||| |||||||||||||||||| |||||||||||||||||||| || ||||||| |||  |||||||    
T  40723339 ggatttatttgaccgacggagataaacctaagggaccaaaacatgagttttattagttatgggaccaaaatgaaaattgcaaaattaattaggggaccaa 40723240  T
Q  106 atgccctcttaagcctatat 125  Q
    ||| ||| ||||||| ||||    
T  40723239 atgacctattaagccaatat 40723220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 40724849 - 40724962
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||||  ||||||||| | |||| |||| |||||||||||||||||| |  ||||| |||||| ||||||| |||||| |||| ||||||||    
T  40724849 ggatttatttgactaacggagacaaacttaagggaccaaaacatgagttttattagt--tgggatcaaaataaaaactgcaaattaattaagggaccaaa 40724946  T
Q  107 tgccctcttaagccta 122  Q
    || ||| |||||||||    
T  40724947 tgacctattaagccta 40724962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 44 - 108
Target Start/End: Original strand, 53435795 - 53435859
Alignment:
Q  44 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    |||||||||||||||||||||||||||||||||||||||||  |||||| |||| ||| ||||||    
T  53435795 aaaacatgagttttattacttatgggaccaaaatgaaaacttgaaattaattaagggatcaaatg 53435859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 2162688 - 2162622
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||| |||| ||||||||||||| ||||||||| |||||||||||||||||||| ||| ||||||||    
T  2162688 ggaccaaaatatgagttttattagttatgggactaaaatgaaaactgaaaattaattagaggaccaa 2162622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 13533265 - 13533379
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||| ||| |||||| || || |||||||||  |||||| ||| |||||||||    
T  13533265 ggatttatttgaccgacggagacaaacgtgagggaccaaaacatgagtttttttagttatggaactaagatgaaaacttgaaattaattagaggaccaaa 13533364  T
Q  107 tgccctcttaagcct 121  Q
    || ||| ||||||||    
T  13533365 tgacctattaagcct 13533379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 39 - 120
Target Start/End: Complemental strand, 53432141 - 53432060
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcc 120  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||  |||||| |||| ||| |||| | ||| |||||||    
T  53432141 ggaccaaaacataagttttattacttatgggaccaaaatgaaaacttgaaattaattaagggatcaaacgacctattaagcc 53432060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 105
Target Start/End: Original strand, 14524888 - 14524954
Alignment:
Q  40 gactaaaacatgagttttattacttatgggaccaaaatg-aaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||||  |||||| ||||||||||||    
T  14524888 gactaaaacatgagttttattaattatgggatcaaaatgaaaaacttgaaattaattaaaggaccaa 14524954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 668465 - 668412
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||| ||||| |||||||||||| ||||| ||||||||||||||||||||||||    
T  668465 ggaccaaaacgtgagttttattagttatgagaccaaaatgaaaactgaaaatta 668412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 3921173 - 3921234
Alignment:
Q  44 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||| || ||||||||| ||||| |||||||||||||||||||||||| |||| |||||||    
T  3921173 aaaacttgggttttattatttatgagaccaaaatgaaaactgaaaattaattaagggaccaa 3921234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 1190243 - 1190295
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| |||||||||||||||||||||| |||||||||| | |||||||    
T  1190243 gttttattaattatgggaccaaaatgaaaacttaaaattatttgagggaccaa 1190295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 92
Target Start/End: Original strand, 669693 - 669735
Alignment:
Q  50 tgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||||||||||| |||||||||||||||||||| |||||||||    
T  669693 tgagttttattaattatgggaccaaaatgaaaattgaaaatta 669735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 13531807 - 13531754
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttatta 61  Q
    ||||| |||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  13531807 gatttttttgaccgacggagagacaattaaaggaccaaaacatgagttttatta 13531754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 20625554 - 20625623
Alignment:
Q  52 agttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||||||  |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||  ||||||||    
T  20625554 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcct 20625623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 52963679 - 52963582
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||||||| ||||||| | | || | |||| |||||||  | ||||||| || || ||||||||||||||||  |||||||||| ||||||||    
T  52963679 gatttatttgacaaacggagaaaaacttgagggaccaaaacatacgatttattaattgtgagaccaaaatgaaaacttgaaattatttagaggaccaa 52963582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 20620207 - 20620151
Alignment:
Q  50 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||  |||||||||||||||||| ||||| | ||||||||| |||||||||    
T  20620207 tgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaa 20620151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 40792816 - 40792765
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||    
T  40792816 gttttattaattgtgggaccaaaatgaaaacttaaaattaattagaggacca 40792765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 7053259 - 7053177
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||| |||| || |||||||||| |||||| ||||||||| ||||||||||||| |||  |||  ||||| ||| ||||||||    
T  7053259 ggacaaaaatataagttttattaattatggaaccaaaatgtaaactgaaaattaattaggggaaaaaatgacctattaagcct 7053177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 108
Target Start/End: Original strand, 11115048 - 11115089
Alignment:
Q  67 gggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    |||||||||||||||||||||||| | |||| ||||||||||    
T  11115048 gggaccaaaatgaaaactgaaaataagttaagggaccaaatg 11115089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 390282 - 390230
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| || |||||||||||||||||||  ||||||||||  |||||||    
T  390282 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 390230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 1588141 - 1588193
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||| || |||||| |||||||||||| |||||||||| | ||||||||    
T  1588141 ttttattaattgtgggactaaaatgaaaacttaaaattatttgagggaccaaa 1588193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 1829832 - 1829776
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattt 95  Q
    ||||||||| ||  ||||||||| || |||||||||||||||||||  |||||||||    
T  1829832 ggactaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaattattt 1829776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 119
Target Start/End: Complemental strand, 34326840 - 34326729
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||  ||||| |  ||| |||| ||||||| |||||||||| ||||||||  || ||||||| | ||||||| |||  ||||||||    
T  34326840 ggatttatttgaccgacaaagacaaacctaagggaccaaaacataagttttatta-ttatgggattaagatgaaaattaaaaattaattaggggaccaaa 34326742  T
Q  107 tgccctcttaagc 119  Q
    || ||| ||||||    
T  34326741 tgacctattaagc 34326729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 44501583 - 44501531
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| ||||||||||| ||||||||||  ||||||||| | |||||||    
T  44501583 gttttattaattatgggaccagaatgaaaacttgaaattatttgagggaccaa 44501531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 54865169 - 54865117
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||| |||||||||||||||||||||  |||||||  ||| ||||||||    
T  54865169 ttttattaattatgggaccaaaatgaaaacataaaattaaataagggaccaaa 54865117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 4e-34; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 8 - 121
Target Start/End: Original strand, 41743621 - 41743734
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    ||||| |||||| |||||||| ||| ||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  41743621 gatttttttgaccgacggagaaacaattaaaggaccaaaacataagttttattacttatgggaccaaaatgaaaacttaaaattaattaaaggaccaaat 41743720  T
Q  108 gccctcttaagcct 121  Q
    | ||| ||||||||    
T  41743721 gacctattaagcct 41743734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 38696419 - 38696306
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| ||||||| || | || | |||| |||||||||||||||||| ||||| |||||||||||||||| ||||||| |||  ||||||||    
T  38696419 ggatttatttgaccgacggaggcaaacttgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttaaaattaattaggggaccaaa 38696320  T
Q  107 tgccctcttaagcc 120  Q
    || ||| |||||||    
T  38696319 tggcctattaagcc 38696306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 8 - 123
Target Start/End: Original strand, 38697012 - 38697127
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||| ||||||| || |  | |||||  |||||||||||||||||| ||||||||||||||||||||||| |||||| || | |||||||||    
T  38697012 gatttatttgaccgacggaggcaaatgtgaaggatcaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattgagggaccaaat 38697111  T
Q  108 gccctcttaagcctat 123  Q
    |  || ||||||||||    
T  38697112 gagctattaagcctat 38697127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 42877730 - 42877615
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||| ||||| |  | | |||| |||||||||||||||||| ||||| ||||||||||||||||  |||||| ||||  |||||||    
T  42877730 ggatttatttgactgacgaagacaaacgtgagggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttgaaattaattaagagaccaaa 42877631  T
Q  107 tgccctcttaagccta 122  Q
    |  ||| |||||||||    
T  42877630 taacctattaagccta 42877615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 45395078 - 45394977
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||  ||| |||| ||| ||||   || |||||||||||||||||| |||||||| ||||||||||||| ||||||| |||| ||| ||||    
T  45395078 ggatttatttgatcgacagagagacaattaagtaaccaaaacatgagttttattaattatgggatcaaaatgaaaacttaaaattaattaagggatcaaa 45394979  T
Q  107 tg 108  Q
    ||    
T  45394978 tg 45394977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 42878859 - 42878935
Alignment:
Q  45 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||||||||||| |||| ||||||||||||||||||||||  |||||| |||  |||||||||| ||| ||||||||    
T  42878859 aaacatgagtttcattagttatgggaccaaaatgaaaacttgaaattaattaggggaccaaatgacctattaagcct 42878935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 28418885 - 28418819
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  28418885 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 28418819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 28420211 - 28420277
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  28420211 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 28420277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 45437519 - 45437601
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||  |||||| |||  ||| |||||| ||| ||||||||    
T  45437519 ggaccaaaacatgagttttattaattatgggatcaaaatgaaaacttgaaattaattaggggatcaaatgacctattaagcct 45437601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 107
Target Start/End: Original strand, 14840905 - 14841004
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    ||||||||||| ||||||||||| |  | | |||| ||||||||| |||||||| |||||| ||||||||||||| |  |||||| | ||| ||||||||    
T  14840905 gatttatttgatagacggagacaaatatgagggaccaaaacatgaattttattagttatggtaccaaaatgaaaatttgaaattaatcaaaagaccaaat 14841004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 92
Target Start/End: Original strand, 45396060 - 45396107
Alignment:
Q  45 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  45396060 aaacgtgagtttttttagttatgggaccaaaatgaaaactgaaaatta 45396107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 17702312 - 17702378
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||| |||||||  ||||||||| |||||||||||||||||||| || |||||| |||| |||||||    
T  17702312 ggaccaaaacataggttttattagttatgggaccaaaatgaaaattggaaattaattaagggaccaa 17702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 32798536 - 32798634
Alignment:
Q  6 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||||||||| ||||||| | | || | |||||||||  |  ||||||||| || |||||||||||||||||||  ||||||||| | ||||||    
T  32798536 aggatttatttgacaaacggagaaaaaattgagggactaaaaggtacgttttattaattgtgggaccaaaatgaaaacttgaaattatttgagggacca 32798634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 211706 - 211605
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  211706 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 211607  T
Q  107 tg 108  Q
    ||    
T  211606 tg 211605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 240550 - 240651
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  240550 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 240649  T
Q  107 tg 108  Q
    ||    
T  240650 tg 240651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Complemental strand, 725329 - 725228
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  725329 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 725230  T
Q  107 tg 108  Q
    ||    
T  725229 tg 725228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 793905 - 794006
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||  | ||||||| | | |||| |||||||||| |  ||||||||| || ||||||||||||||||||   ||||||||||| ||| ||||    
T  793905 ggatttatttggtaaacggagaaaaaattaagggactaaaacgtctgttttattaattgtgggaccaaaatgaaaacatgaaattatttaagggatcaaa 794004  T
Q  107 tg 108  Q
    ||    
T  794005 tg 794006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 30787652 - 30787693
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattattt 95  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  30787652 ttttattaattatgggaccaaaatgaaaacttaaaattattt 30787693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 92
Target Start/End: Complemental strand, 28735062 - 28735014
Alignment:
Q  44 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||||||||||||||||| |||||| ||||||||||| ||| |||||||    
T  28735062 aaaacatgagttttattaattatggaaccaaaatgaacacttaaaatta 28735014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 32797203 - 32797151
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| || |||||||||||||||||||  ||||||||||| |||||||    
T  32797203 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaagggaccaa 32797151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 82
Target Start/End: Complemental strand, 4810580 - 4810505
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaa 82  Q
    ||||||||||| || ||||||| | | || |||||| |||||||  ||||||||| ||||||||||||||| ||||    
T  4810580 ggatttatttggcaaacggagaaaaatttgaaggaccaaaacatacgttttattaattatgggaccaaaataaaaa 4810505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 30786741 - 30786690
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||| ||||| || ||||||||||||| |||||||||| ||||||||    
T  30786741 gttttattaattatgtgatcaaaatgaaaacttaaaattatttgaaggacca 30786690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 32693895 - 32693844
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||    
T  32693895 gttttattaattgtgggaccaaaatgaaaacttaaaattaattagaggacca 32693844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 42872193 - 42872291
Alignment:
Q  6 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||||||||| ||||||  | |  | |||||||||||| |  ||||||||  ||||| ||  |||||||||||| |||||||||||| ||||||    
T  42872193 aggatttatttgacaaacggaggaaaaagtgaaggactaaaacgtacgttttattcattatgagattaaaatgaaaacttaaaattatttaagggacca 42872291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 34504677 - 34504730
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||| |||||||| ||||||||| ||||| ||| ||||| ||||||||||||||    
T  34504677 ggaccaaaacatgtgttttattagttatgagactaaaataaaaactgaaaatta 34504730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 42870892 - 42870835
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattta 96  Q
    |||||||||| |  ||||||||| || |||||||||||||||||||  ||||||||||    
T  42870892 ggactaaaacgtacgttttattaattgtgggaccaaaatgaaaacttgaaattattta 42870835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 35105 - 35211
Alignment:
Q  14 tttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctc 113  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||  ||||||||||||||||||| || ||||||||||| |||||||||| |||     
T  35105 tttgacagacggagacacagttaaaggaccaaaacatgacttttattagatatgggaccaaaatgaaaattggaaattatttaagggaccaaatgaccta 35204  T
Q  114 ttaagcc 120  Q
    |||||||    
T  35205 ttaagcc 35211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 46201242 - 46201129
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||| | |||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||| |||   |||||||    
T  46201242 ggatttatttggccgacggaaacacaattaaaggatcaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta-ttatgagaccaaa 46201144  T
Q  107 tgccctcttaagcct 121  Q
    || ||||||||||||    
T  46201143 tgacctcttaagcct 46201129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 46202288 - 46202401
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||||||| ||||| ||| | ||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||| ||||    
T  46202288 ggatttatttgaccgacggagacacaattaaatgaccagaacatgagttttattacttatgggatcaaaatgaaaactgtaaattatttaagggatcaaa 46202387  T
Q  107 tgccctcttaagcc 120  Q
     | ||| |||||||    
T  46202388 cgacctattaagcc 46202401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 27858 - 27750
Alignment:
Q  14 tttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctc 113  Q
    ||||||||||||| ||||||||||||||| ||||||||| ||||||||  ||||| ||||||||||||| || ||||||||||| |||||||||| |||     
T  27858 tttgacagacggatacacagttaaaggaccaaaacatgacttttattagatatggaaccaaaatgaaaattggaaattatttaagggaccaaatgaccta 27759  T
Q  114 ttaagccta 122  Q
    |||||||||    
T  27758 ttaagccta 27750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 38539780 - 38539663
Alignment:
Q  9 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    |||| |||||| |||||||| ||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||  |||||| |||| ||| ||||||    
T  38539780 atttttttgaccgacggagagacaattaagggaccaaaacatgagttttattatttatgggaccaaaatgaaaacttgaaattaattaagggatcaaatg 38539681  T
Q  109 ccctcttaagcctatatt 126  Q
     ||| |||||||||||||    
T  38539680 acctattaagcctatatt 38539663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 8 - 108
Target Start/End: Complemental strand, 25533298 - 25533198
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||| |||||||| ||| || |||||| ||||||||| |||||||| ||||||||||||||||||||||  |||||| ||||  ||||||||    
T  25533298 gatttatttgaccgacggagatacaattgaaggaccaaaacatgaattttattagttatgggaccaaaatgaaaacttgaaattaattaagagaccaaat 25533199  T
Q  108 g 108  Q
    |    
T  25533198 g 25533198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 9662241 - 9662355
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||| ||| |||||| || || |||||||||  |||||| ||| |||||||||    
T  9662241 ggatttatttgaccgacggagacaaacgtgagggaccaaaacatgagtttttttagttatggaactaagatgaaaacttgaaattaattagaggaccaaa 9662340  T
Q  107 tgccctcttaagcct 121  Q
    || ||| ||||||||    
T  9662341 tgacctattaagcct 9662355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 32603012 - 32602946
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| |  ||||||||| ||||||||||||||| ||||||  ||||||||| |||||||||    
T  32603012 ggactaaaacgtacgttttattaattatgggaccaaaataaaaacttgaaattatttgaaggaccaa 32602946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 9660783 - 9660730
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttatta 61  Q
    ||||| |||||| |||||||| ||| ||||||||| ||||||||||||||||||    
T  9660783 gatttttttgaccgacggagagacaattaaaggaccaaaacatgagttttatta 9660730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 33779121 - 33779178
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattta 96  Q
    |||||||||| |||||||||||| || |||| ||||||||||||||  ||||||||||    
T  33779121 ggactaaaacgtgagttttattaattgtggggccaaaatgaaaacttgaaattattta 33779178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 105
Target Start/End: Original strand, 10942313 - 10942355
Alignment:
Q  63 ttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||| ||||||||||||||||||||| |||| |||||||    
T  10942313 ttatgggatcaaaatgaaaactgaaaattaattaagggaccaa 10942355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 104
Target Start/End: Original strand, 32256447 - 32256497
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    |||||||| ||||||||||||||||||||||  ||||||||| | ||||||    
T  32256447 ttttattaattatgggaccaaaatgaaaacttgaaattatttgagggacca 32256497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 124
Target Start/End: Complemental strand, 41328287 - 41328213
Alignment:
Q  50 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctata 124  Q
    |||||||||  | |||||||||||||||| ||||  | ||||||||| ||||||||||| ||  |||||||||||    
T  41328287 tgagttttacaatttatgggaccaaaatgtaaacgcataattatttagaggaccaaatgtccaattaagcctata 41328213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 105
Target Start/End: Complemental strand, 30333395 - 30333298
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||||||| ||||||| | |  | | |||| |||| ||  ||||||||| || |||||||||||||||||||  ||||||||||  |||||||    
T  30333395 gatttatttgacaaacggagaaaaaaatgagggaccaaaagatacgttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 30333298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 46318616 - 46318741
Alignment:
Q  1 agccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaagg 100  Q
    |||||||||||||||||||||||||||| ||| || | |||| ||||||||| |||||||| ||||||||| ||||| ||||||  |||||| |||||||    
T  46318616 agccaaggatttatttgacagacggagatacaattgagggaccaaaacatgacttttattagttatgggacaaaaatcaaaacttgaaattaattaaagg 46318715  T
Q  101 accaaatgccctcttaagcctatatt 126  Q
    |||||||| ||| |||||||||||||    
T  46318716 accaaatgacctattaagcctatatt 46318741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 15746772 - 15746886
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||| |||||||| ||| |||| |||| ||||||||||||||||||||||||||||||||||||||| || |||||| |||  |||||||||    
T  15746772 gatttatttgactgacggagatacaattaagggaccaaaacatgagttttattacttatgggaccaaaatgaaaattggaaattaattaggggaccaaat 15746871  T
Q  108 gccctcttaagccta 122  Q
    | ||| |||||||||    
T  15746872 gacctattaagccta 15746886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 48097036 - 48097149
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||||| |  ||| ||||||||||||||||||||||| ||||||||||||||| |||| || |||||| ||| ||||| |||    
T  48097036 ggatttatttgaccgacggagacaaacctaagggactaaaacatgagttttattagttatgggaccaaaataaaaattggaaattaattagaggactaaa 48097135  T
Q  107 tgccctcttaagcc 120  Q
    || ||| |||||||    
T  48097136 tgacctattaagcc 48097149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 15743389 - 15743272
Alignment:
Q  5 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||||||||| || ||||| ||| | || |||| |||||||||||||||||||||||| ||||||||| |||| || |||||| ||| |||||||    
T  15743389 aaggatttatttgactgatggagatacaatcaagggaccaaaacatgagttttattacttatgagaccaaaataaaaattggaaattaattagaggacca 15743290  T
Q  105 aatgccctcttaagccta 122  Q
    |||  ||| |||||||||    
T  15743289 aataacctattaagccta 15743272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 42244731 - 42244629
Alignment:
Q  18 acagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaa 117  Q
    |||||||||||   | |||| |||| |||||||||||||||||| |||||||| ||||||||||| |  |||||| ||||||||||||||| ||| ||||    
T  42244731 acagacggagatcaacttaagggaccaaaacatgagttttattaattatgggatcaaaatgaaaatttgaaattaattaaaggaccaaatgacctattaa 42244632  T
Q  118 gcc 120  Q
    |||    
T  42244631 gcc 42244629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 7 - 121
Target Start/End: Complemental strand, 46467257 - 46467143
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||||| |||||| || |  | | ||||  ||||||||||||||||| ||||||||||||||||||||||  |||||| |||||||| |||     
T  46467257 ggatttatttgacaaacggaggcaaacctgagggaccgaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaaaggatcaat 46467158  T
Q  107 tgccctcttaagcct 121  Q
    || ||| ||||||||    
T  46467157 tgacctattaagcct 46467143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 46468724 - 46468843
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||||| || ||| || | || | ||||  ||||||||||||||||| ||||||||||||||| |||| |  |||||| |||||| ||||||    
T  46468724 ggatttatttgacaaacagaggcaaacttgatggaccgaaacatgagttttattagttatgggaccaaaataaaaatttgaaattaattaaagaaccaaa 46468823  T
Q  107 tgccctcttaagcctatatt 126  Q
    || ||| |||||| ||||||    
T  46468824 tgacctattaagcttatatt 46468843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 836230 - 836296
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||| |||||||  |||||||| ||||| |||||||||||||||||||||||| ||| ||||||||    
T  836230 ggactgaaacatggattttattagttatgagaccaaaatgaaaactgaaaattaattagaggaccaa 836296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 51042379 - 51042445
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| |||||||||||| || ||||||||||||||||| || |||||| |||| |||||||    
T  51042379 ggactaaaacgtgagttttattaattgtgggaccaaaatgaaaattggaaattaattaagggaccaa 51042445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 92
Target Start/End: Original strand, 30535674 - 30535759
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||||||||||||| ||||||  | | || | | |||||||| |  ||||||||| |||||| |||||||||||||||||||||||    
T  30535674 ggatttatttgacaaacggagttagatttgaggaactaaaacgttggttttattaattatggaaccaaaatgaaaactgaaaatta 30535759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 45 - 105
Target Start/End: Complemental strand, 835318 - 835258
Alignment:
Q  45 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||| |||||||||||| ||||| ||||||||||||||||| |||||| |||  |||||||    
T  835318 aaacgtgagttttattagttatgagaccaaaatgaaaactgcaaattaattaggggaccaa 835258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 20064257 - 20064173
Alignment:
Q  37 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||||| ||||| || |||||||||  |||||||||||||||||||| | |||||| || | ||||||||||  || ||||||||    
T  20064257 aaggaccaaaacgtgtgttttattagatatgggaccaaaatgaaaacgggaaattaattgagggaccaaatgagctattaagcct 20064173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 34352008 - 34352056
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 102  Q
    |||||||| || ||||||||||||||||||| |||||||||||| ||||    
T  34352008 ttttattaattgtgggaccaaaatgaaaacttaaaattatttaagggac 34352056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 106
Target Start/End: Complemental strand, 18819031 - 18818988
Alignment:
Q  63 ttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||| |||||||||||||||||| |||||||| ||||    
T  18819031 ttatgggaccataatgaaaactgaaaattaattaaaggatcaaa 18818988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 108
Target Start/End: Original strand, 20069922 - 20069993
Alignment:
Q  37 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    |||||| |||||||| |||||||||  |||| ||||||||||||||| | |||||| || | ||||||||||    
T  20069922 aaggaccaaaacatgtgttttattagatatgagaccaaaatgaaaacgggaaattaattgagggaccaaatg 20069993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 77
Target Start/End: Complemental strand, 8027334 - 8027292
Alignment:
Q  35 taaaggactaaaacatgagttttattacttatgggaccaaaat 77  Q
    |||||||||||||| |||||||||||| ||||| |||||||||    
T  8027334 taaaggactaaaacgtgagttttattaattatgagaccaaaat 8027292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 15071421 - 15071355
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||| |||||||  ||||||||| ||||| ||||||||||||||||  ||||||||||  |||||||    
T  15071421 ggaccaaaacatacgttttattaattatgtgaccaaaatgaaaacttgaaattatttaggggaccaa 15071355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 16123366 - 16123304
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaagga 101  Q
    |||||||||| ||| |||||||| || ||| |||||||||||||||  |||||||||| ||||    
T  16123366 ggactaaaacgtgaattttattaattgtggaaccaaaatgaaaactttaaattatttagagga 16123304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 24499692 - 24499758
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||| ||||| |||||||||||| || || ||||||||||||||||  ||||||||||  |||||||    
T  24499692 ggaccaaaacgtgagttttattaattgtgagaccaaaatgaaaacttgaaattatttaggggaccaa 24499758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 49619887 - 49619952
Alignment:
Q  67 gggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatattaaaaga 132  Q
    ||||||||| |||||||||||||| | |||| ||||||||||   | |||||||||| ||||||||    
T  49619887 gggaccaaattgaaaactgaaaataaattaagggaccaaatgatgtattaagcctattttaaaaga 49619952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 49802900 - 49802976
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaac 83  Q
    ||||||||||| || ||||||| | || | | |||||||||| | | |||||||| || ||||||||||||||||||    
T  49802900 ggatttatttggcaaacggagaaaaagatgagggactaaaacgtcatttttattaattgtgggaccaaaatgaaaac 49802976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 6e-30; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 35904748 - 35904862
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||| |||||| |||||||||| | ||||||||| |||||||||||||||||||||||||| |||||||||||| |  |||||||||||||||| |||    
T  35904748 ggatttttttgactgacggagacagaattaaaggaccaaaacatgagttttattacttatggggccaaaatgaaaattagaaattatttaaaggactaaa 35904847  T
Q  107 tgccctcttaagcct 121  Q
    || ||| ||||||||    
T  35904848 tgacctattaagcct 35904862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 34147215 - 34147132
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  34147215 ggaccaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttgagggaccaaatgacctattaagccta 34147132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 35903625 - 35903506
Alignment:
Q  1 agccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaagg 100  Q
    ||||||||||||||||||| |||||||| | | || | |||| ||||||||| |||||||| ||||||||||||||||||||||  |||||| |||||||    
T  35903625 agccaaggatttatttgactgacggagatataattgagggaccaaaacatgacttttattagttatgggaccaaaatgaaaacttgaaattaattaaagg 35903526  T
Q  101 accaaatgccctcttaagcc 120  Q
    |||||||| ||| |||||||    
T  35903525 accaaatgacctattaagcc 35903506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 39 - 122
Target Start/End: Complemental strand, 2276360 - 2276277
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    |||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||| | |||||||||| ||| |||||||||    
T  2276360 ggaccaaaacatgagttttattacttataggactaaaatgaaaactgaaaattatttgagggaccaaatgacctattaagccta 2276277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 123
Target Start/End: Original strand, 34148363 - 34148481
Alignment:
Q  5 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||||||||| |||||||    | || | |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||    
T  34148363 aaggatttatttgaccgacggaggtgaacttgagggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaattatttgagggacca 34148462  T
Q  105 aatgccctcttaagcctat 123  Q
    |||| ||| ||||||||||    
T  34148463 aatgacctattaagcctat 34148481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 37957061 - 37956961
Alignment:
Q  6 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||| |||||| |||||||| ||| |||| |||| ||||||||| ||||||||||||||||||||||||||||| |  |||||| |||| |||||||    
T  37957061 aggatttctttgaccgacggagagacaattaagggaccaaaacatgaattttattacttatgggaccaaaatgaaaatttgaaattaattaagggaccaa 37956962  T
Q  106 a 106  Q
    |    
T  37956961 a 37956961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 33996058 - 33995948
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||  | | |||| ||||||||||||||||||||||| |||| |||| |||||||||||| ||||||| |||| ||||||||    
T  33996058 ggatttatttgaccgacggagggaaaattaagggactaaaacatgagttttattagttat-ggacaaaaatgaaaacttaaaattaattaagggaccaaa 33995960  T
Q  107 tgccctcttaag 118  Q
    || ||| |||||    
T  33995959 tgacctattaag 33995948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 2277506 - 2277574
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||    
T  2277506 ggaccaaaacataagttttattacttatgggaccaaaatgaaaactggaaattatttgagggaccaaat 2277574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 34 - 121
Target Start/End: Original strand, 35061348 - 35061434
Alignment:
Q  34 ttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||| |||||||||| |||||||||||| |||||| |||||||||||||||  |||||| |||| |||||||||| ||| ||||||||    
T  35061348 ttaagggactaaaacgtgagttttattagttatgg-accaaaatgaaaacttcaaattaattaagggaccaaatgacctattaagcct 35061434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Complemental strand, 11547734 - 11547672
Alignment:
Q  43 taaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||  |||||||||||||||||||    
T  11547734 taaaacatgtgttttattaattatgagaccaaaatgaaaacttgaaattatttaaaggaccaa 11547672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 122
Target Start/End: Complemental strand, 35061339 - 35061267
Alignment:
Q  50 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||  |||  ||||| ||| |||||||||    
T  35061339 tgagttttattagttatgggaccaaaatgaaaactgaaaattaattaggggattaaatgacctattaagccta 35061267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 44 - 107
Target Start/End: Complemental strand, 34512888 - 34512825
Alignment:
Q  44 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||||||||| |||||||||||||||||||||||  ||||| |||  |||||||||    
T  34512888 aaaacatgagttttattaattatgggaccaaaatgaaaactggtaattaattaggggaccaaat 34512825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 92
Target Start/End: Original strand, 30749325 - 30749383
Alignment:
Q  34 ttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaatta 92  Q
    |||| |||| |||||||||||||||||| ||||||||| ||||||||||||| ||||||    
T  30749325 ttaagggaccaaaacatgagttttattaattatgggactaaaatgaaaactggaaatta 30749383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 122
Target Start/End: Original strand, 34513596 - 34513673
Alignment:
Q  45 aaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    ||||||||||||||||| |||||| ||||||||||||| ||  ||||| |||  |||||||||| ||| |||||||||    
T  34513596 aaacatgagttttattaattatggaaccaaaatgaaaattggtaattaattaggggaccaaatgacctattaagccta 34513673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 28561433 - 28561382
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||| || || |||||||||||||||| |||||||||||| ||||||    
T  28561433 gttttattaattgtgagaccaaaatgaaaacttaaaattatttaagggacca 28561382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 7753527 - 7753640
Alignment:
Q  3 ccaaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 102  Q
    |||| |||||||| ||| ||||  || ||| |||| |||| ||||||||||||| |||| |||| ||||||||||||||| |  |||||| |||  ||||    
T  7753527 ccaaagatttattagaccgacgaggagacaattaagggacaaaaacatgagtttaattaattat-ggaccaaaatgaaaatttgaaattaattaggggac 7753625  T
Q  103 caaatgccctcttaa 117  Q
    |||||| ||| ||||    
T  7753626 caaatgacctattaa 7753640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 122
Target Start/End: Original strand, 9474103 - 9474172
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    |||| |||| |||| ||| ||||||||||| ||||||||| |||  |||||||||| ||| |||||||||    
T  9474103 gtttcattatttataggaacaaaatgaaaattgaaaattaattaggggaccaaatgacctattaagccta 9474172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 11315998 - 11315946
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| || |||||||||||||||||||  ||||||||||  |||||||    
T  11315998 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaggggaccaa 11315946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Complemental strand, 43033147 - 43033103
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaa 97  Q
    ||||||||| || |||||||||||||||||||  |||||||||||    
T  43033147 gttttattaattgtgggaccaaaatgaaaacttgaaattatttaa 43033103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2071 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold2071
Description:

Target: scaffold2071; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 686 - 799
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| ||| |||||| | || | |||| |||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||||||||    
T  686 ggatttatttgaccgacagagacaaacttgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactggaaattaattagaggaccaaa 785  T
Q  107 tgccctcttaagcc 120  Q
    || ||| |||||||    
T  786 tgacctattaagcc 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 122
Target Start/End: Original strand, 128594 - 128711
Alignment:
Q  5 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    |||||||| |||||| |||||||||| | |||| |||| |||||||||||||||||| | || ||||||||||||||||| ||||||| |||| ||||||    
T  128594 aaggatttttttgaccgacggagacaaatttaagggaccaaaacatgagttttattagtaataggaccaaaatgaaaacttaaaattaattaagggacca 128693  T
Q  105 aatgccctcttaagccta 122  Q
    |||| ||| |||||||||    
T  128694 aatgacctattaagccta 128711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 7 - 122
Target Start/End: Complemental strand, 127544 - 127429
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| ||||||| || |  | | |||| |||||||||||||||||| |||||||||||||| |||||||  |||||| |||  ||||||||    
T  127544 ggatttatttgaccgacggaggcaaacatgagggaccaaaacatgagttttattagttatgggaccaaaacgaaaacttgaaattaattaggggaccaaa 127445  T
Q  107 tgccctcttaagccta 122  Q
    || ||| |||||||||    
T  127444 tgacctattaagccta 127429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 1122 - 1205
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    |||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||| ||| |||||||||    
T  1122 ggaccaaaacatgagttttattacttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaagccta 1205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 9 - 108
Target Start/End: Complemental strand, 16208633 - 16208534
Alignment:
Q  9 atttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    |||| ||||||||||  ||||||||||||||||| ||||||||| ||||||||  |||||||||||||| |||| |||||||||||||| ||||||||||    
T  16208633 atttttttgacagactaagacacagttaaaggaccaaaacatgacttttattagatatgggaccaaaataaaaattgaaaattatttaagggaccaaatg 16208534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 7308491 - 7308570
Alignment:
Q  46 aacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatat 125  Q
    ||||||||||||||||||||| |||||||||||||||||  |||||| |||| || ||||||| ||| ||||||||||||    
T  7308491 aacatgagttttattacttataggaccaaaatgaaaacttgaaattaattaaggggccaaatgacctattaagcctatat 7308570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 37 - 103
Target Start/End: Complemental strand, 7310357 - 7310291
Alignment:
Q  37 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacc 103  Q
    ||||||| ||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||||    
T  7310357 aaggacttaaacatacgttttattaattatgggaccaaaatgaaaacttaaaattatttaaaggacc 7310291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 233601 - 233667
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| ||  |||||||| |||||||||||||||||||| |  |||||||||||||||||||    
T  233601 ggactaaaacgtgttttttattaattatgggaccaaaatgaaaaattgaaattatttaaaggaccaa 233667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 232241 - 232189
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  232241 gttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 232189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 6452562 - 6452614
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||  |||||||    
T  6452562 gttttattaattatgggaccaaaatgaaaacttgaaattatttaggggaccaa 6452614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 12780610 - 12780538
Alignment:
Q  35 taaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||| ||||||||||||| |||||||| |||||||| ||| || |||||| ||||||| |||| ||| |||||    
T  12780610 taaatgactaaaacatgaattttattaattatgggatcaacataaaaactaaaaattaattaagggatcaaat 12780538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 107
Target Start/End: Complemental strand, 12784789 - 12784717
Alignment:
Q  35 taaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||||||||| |||||||| ||||| |||||| || ||| || ||||||| |||| ||| |||||    
T  12784789 taaaggactaaaacatgaattttattaattatgagaccaacataaaatctaaaaattaattaagggatcaaat 12784717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 35037197 - 35037145
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||| | ||||| |||||||||||||||||||||||| ||| |||||||||    
T  35037197 ttttatgagttatgagaccaaaatgaaaactgaaaattaattagaggaccaaa 35037145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 7311777 - 7311826
Alignment:
Q  55 tttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||| || ||||| ||||||||||||| |||||||||||| ||||||    
T  7311777 tttattaattgtgggatcaaaatgaaaacttaaaattatttaagggacca 7311826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 1010369 - 1010484
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||||||| ||||||||||||||| ||||||  |||||| |||| ||||||||    
T  1010369 ggatttatttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaataaaaacttgaaattaattaagggaccaaa 1010468  T
Q  107 tgccctcttaagccta 122  Q
    || ||| |||||||||    
T  1010469 tgacctattaagccta 1010484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 7 - 118
Target Start/End: Complemental strand, 8521366 - 8521255
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||| |||||||||| |  | | |||| |||||||||||||||||| ||||||||||||||||||||||  |||||| |||| ||||||||    
T  8521366 ggatttatttgactgacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaagggaccaaa 8521267  T
Q  107 tgccctcttaag 118  Q
    || ||| |||||    
T  8521266 tgacctattaag 8521255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 6 - 121
Target Start/End: Original strand, 8523750 - 8523865
Alignment:
Q  6 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||||||| |||||||||| |  | |||||  |||||||||||||||||| ||||||||||||||||||||||  |||||| |||  |||||||    
T  8523750 aggatttatttgactgacggagacaaacatgaaggatcaaaacatgagttttattagttatgggaccaaaatgaaaacttgaaattaattaggggaccaa 8523849  T
Q  106 atgccctcttaagcct 121  Q
    ||| ||| ||||||||    
T  8523850 atgacctattaagcct 8523865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 32759051 - 32759167
Alignment:
Q  5 aaggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||||||||| |||||||    | || | |||| |||||||||||||||||| |||||| || ||||||||||||||||||||||| | ||||||    
T  32759051 aaggatttatttgaccgacggaggtgaacttgagggaccaaaacatgagttttattatttatggaactaaaatgaaaactgaaaattatttgagggacca 32759150  T
Q  105 aatgccctcttaagcct 121  Q
    |||| ||| ||||||||    
T  32759151 aatgacctattaagcct 32759167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 7 - 120
Target Start/End: Complemental strand, 9169698 - 9169584
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacat-gagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||||||| |||||||| ||| ||||| ||| ||||||| ||||||||||| ||||||||| ||||||||||||  |||||| |||| || ||||    
T  9169698 ggatttatttgaccgacggagagacaattaaaagaccaaaacatagagttttattaattatgggactaaaatgaaaacttgaaattaattaaggggccaa 9169599  T
Q  106 atgccctcttaagcc 120  Q
    ||| ||| |||||||    
T  9169598 atgacctattaagcc 9169584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 117
Target Start/End: Complemental strand, 32757904 - 32757826
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaa 117  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||| | |||||||||| ||| ||||    
T  32757904 ggaccaaaacatgagttttattatttatgggaccaaaatgaaaactggaaattatttgagggaccaaatgacctattaa 32757826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 26047917 - 26047806
Alignment:
Q  14 tttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctc 113  Q
    ||||||||||||||  ||| || | ||||||||||||||||||||||| ||||| ||||||||| |||| |  |||||| ||| ||||||||||| |||     
T  26047917 tttgacagacggagggacaattgagggactaaaacatgagttttattagttatgagaccaaaataaaaatttgaaattaattagaggaccaaatgaccta 26047818  T
Q  114 ttaagcctatat 125  Q
    |||| |||||||    
T  26047817 ttaaacctatat 26047806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 120
Target Start/End: Complemental strand, 1009294 - 1009182
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||| || ||||||| |  | ||| || |||||||||||||||||| |||||| |||||||||||||||  |||||| |||  | |||||||    
T  1009294 gatttatttgactgatggagacaaacatgaagaaccaaaacatgagttttattagttatggaaccaaaatgaaaacttgaaattaattagggaaccaaat 1009195  T
Q  108 gccctcttaagcc 120  Q
    | ||| |||||||    
T  1009194 gacctattaagcc 1009182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 54 - 105
Target Start/End: Original strand, 34899003 - 34899054
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  34899003 ttttattacttatgggaccaaaatgaaaaatgaaaattaattaagggaccaa 34899054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 23334017 - 23334088
Alignment:
Q  52 agttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctat 123  Q
    |||||||  |||||||||||||||||| ||||| | ||||||||| ||||||||||| ||  ||||||||||    
T  23334017 agttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatgtccaattaagcctat 23334088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 30857881 - 30857814
Alignment:
Q  37 aaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    |||||| |||||||  ||||||||| || ||||||||||||||||||| ||||||| ||| |||||||    
T  30857881 aaggaccaaaacatacgttttattaattgtgggaccaaaatgaaaacttaaaattaattagaggacca 30857814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 23325980 - 23325922
Alignment:
Q  50 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatg 108  Q
    |||||||||  |||||||||||||||||| ||||| | ||||||||| |||||||||||    
T  23325980 tgagttttacaacttatgggaccaaaatgtaaactcataattatttagaggaccaaatg 23325922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 126
Target Start/End: Original strand, 10978330 - 10978403
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatatt 126  Q
    ||||||||| |||| ||||||||||||||| || |||||| |||  ||||||||||  || |||||||||||||    
T  10978330 gttttattatttataggaccaaaatgaaaattggaaattaattaggggaccaaatgatctattaagcctatatt 10978403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 11846308 - 11846376
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaat 107  Q
    |||||||||||  | |||||||| ||||| ||||||||||||| ||| |||||| |||| |||||||||    
T  11846308 ggactaaaacaaaatttttattagttatgagaccaaaatgaaacctgtaaattaattaagggaccaaat 11846376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 24503249 - 24503197
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| |||||||    
T  24503249 gttttattacttatgggaccaaaatgaaaattggtaattaattaagggaccaa 24503197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 96
Target Start/End: Original strand, 22049187 - 22049230
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattattta 96  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||    
T  22049187 gttttattaattatgggaccaaaatgaaaacttgaaattattta 22049230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 24509087 - 24509138
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    |||||||||||||||||||||||||||||| ||  ||||| |||| ||||||    
T  24509087 gttttattacttatgggaccaaaatgaaaattggtaattaattaagggacca 24509138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 105
Target Start/End: Complemental strand, 34894213 - 34894162
Alignment:
Q  54 ttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||||| |||||||||||||||| || |||||| |||| |||||||    
T  34894213 ttttattacttacgggaccaaaatgaaaaatggaaattaattaagggaccaa 34894162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 11796648 - 11796566
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcct 121  Q
    |||| |||| ||||||||||  | |||||||||||||||| ||||| | |||||||||  |||||||||| ||  ||||||||    
T  11796648 ggaccaaaatatgagttttacaatttatgggaccaaaatgtaaactcataattatttaggggaccaaatgtccaattaagcct 11796566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 106
Target Start/End: Original strand, 22308850 - 22308903
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||| |||||||||||||||||||||   ||||||||||  ||||||||    
T  22308850 gttttattaattatgggaccaaaatgaaaacatgaaattatttaggggaccaaa 22308903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 3455629 - 3455745
Alignment:
Q  6 aggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||||||| |||||||||| |  | |||||| |||||||||||||||||| ||||| ||||||||||||||||  |||||| ||   |||||||    
T  3455629 aggatttatttgactgacggagacaaacatgaaggaccaaaacatgagttttattagttatgagaccaaaatgaaaacttgaaattaattcggggaccaa 3455728  T
Q  106 atgccctcttaagccta 122  Q
    ||| ||| |||||||||    
T  3455729 atgacctattaagccta 3455745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 8 - 102
Target Start/End: Original strand, 28909611 - 28909705
Alignment:
Q  8 gatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 102  Q
    ||||||||||||  ||||||||| |  | | |||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||| |||||    
T  28909611 gatttatttgaccaacggagacaaacgtgagggaccaaaacatgagttttattagttatgggaccaaaatgaaaactgaaaattaattagaggac 28909705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 37735385 - 37735319
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||||||  ||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  37735385 ggactaaaacatacgttttattaattatgggaccaaaatgaaaacttaaaattatttaaaggaccaa 37735319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 20288229 - 20288339
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    |||||||||||||  || |||||| | || | |||| || ||||||||||||||| |||||||| ||||||||||||| ||||||| |||  ||||||||    
T  20288229 ggatttatttgactaacagagacaaacttgagggaccaacacatgagttttattaattatgggatcaaaatgaaaactaaaaattaattaggggaccaaa 20288328  T
Q  107 tgccctcttaa 117  Q
    || ||| ||||    
T  20288329 tggcctattaa 20288339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 7 - 108
Target Start/End: Original strand, 43174711 - 43174812
Alignment:
Q  7 ggatttatttgacagacggagacacagttaaaggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaa 106  Q
    ||||||||||||  |||||||| | | || | |||| |||||||||||||||||| |||||||  ||||||||||||| |||||||  ||| ||||||||    
T  43174711 ggatttatttgattgacggagatagatttgagggaccaaaacatgagttttattagttatggggtcaaaatgaaaacttaaaattaaataagggaccaaa 43174810  T
Q  107 tg 108  Q
    ||    
T  43174811 tg 43174812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 18442331 - 18442265
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  18442331 ggactaaaacgtgggttttattaattgtgggaccaaaatgaaaacttgaaattatttagaggaccaa 18442265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 19487405 - 19487339
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| || |||||||||||||||||||  |||||||||| ||||||||    
T  19487405 ggactaaaacgtgggttttattaattgtgggaccaaaatgaaaacttgaaattatttagaggaccaa 19487339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 50809500 - 50809434
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50809500 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50809434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 50810871 - 50810937
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50810871 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50810937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Complemental strand, 50864993 - 50864927
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50864993 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50864927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 50866362 - 50866428
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    |||||||||| || ||||||||| |||||||||||||||||||| |  ||||||||||| |||||||    
T  50866362 ggactaaaacgtgtgttttattaattatgggaccaaaatgaaaaattgaaattatttaagggaccaa 50866428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 42684955 - 42684898
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattattta 96  Q
    |||||||||| | |||||||||  |||||| ||||||||||||||| |||||||||||    
T  42684955 ggactaaaacgtcagttttattcattatggaaccaaaatgaaaacttaaaattattta 42684898  T

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Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 3208549 - 3208497
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| |||||||||||||||||||| || |||||| ||| ||||||||    
T  3208549 gttttattaattatgggaccaaaatgaaaaatggaaattaattagaggaccaa 3208497  T

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Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 20336693 - 20336749
Alignment:
Q  67 gggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctat 123  Q
    |||||||||||||||||||||||||| |||  |||||||||| |||  |||||||||    
T  20336693 gggaccaaaatgaaaactgaaaattaattaggggaccaaatgacctagtaagcctat 20336749  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Original strand, 3209982 - 3210033
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||| || ||||||||||||||||| | |||||||||||| ||||||    
T  3209982 gttttattaattgtgggaccaaaatgaaaatttaaaattatttaagggacca 3210033  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 122
Target Start/End: Complemental strand, 43173960 - 43173882
Alignment:
Q  44 aaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagccta 122  Q
    ||||||||| |||||||| |||||||  ||||||||||| || |||||| |||  ||| |||||| ||| |||||||||    
T  43173960 aaaacatgaattttattagttatggggacaaaatgaaaattggaaattaattaggggatcaaatgacctattaagccta 43173882  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 12108034 - 12108083
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggac 102  Q
    ||||||||| || |||||||||||||||||||  ||||||||||| ||||    
T  12108034 gttttattagttgtgggaccaaaatgaaaacttgaaattatttaagggac 12108083  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 94
Target Start/End: Original strand, 53194921 - 53194962
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatt 94  Q
    ||||||||| ||||||||||||||||||||||  ||||||||    
T  53194921 gttttattaattatgggaccaaaatgaaaacttgaaattatt 53194962  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 55328342 - 55328387
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaact 84  Q
    |||||||||||||| |||||||| ||||| || |||||||||||||    
T  55328342 ggactaaaacatgaattttattaattatgagatcaaaatgaaaact 55328387  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 5123383 - 5123423
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatga 79  Q
    |||||||||| |||||||||||| |||| ||||||||||||    
T  5123383 ggactaaaacgtgagttttattagttatcggaccaaaatga 5123423  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Original strand, 38247527 - 38247579
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||||||||  |||||||||||||| || |||||| |||| |||||||    
T  38247527 gttttattacttatatgaccaaaatgaaaattggaaattaattaagggaccaa 38247579  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 105
Target Start/End: Complemental strand, 40244252 - 40244200
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||||||| || || ||||||||||||||||  ||||||||||| |||||||    
T  40244252 gttttattaattgtgagaccaaaatgaaaacttgaaattatttaagggaccaa 40244200  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 57 - 105
Target Start/End: Complemental strand, 41544723 - 41544675
Alignment:
Q  57 tattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||| |||| |||||||||||||||||  ||||||||||| |||||||    
T  41544723 tattaattataggaccaaaatgaaaacttgaaattatttaatggaccaa 41544675  T

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Target: scaffold0078 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 39 - 101
Target Start/End: Complemental strand, 18891 - 18829
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaagga 101  Q
    |||||||||||| ||||||||||  ||||||||||||||||||||| ||||||||||||||||    
T  18891 ggactaaaacataagttttattaaatatgggaccaaaatgaaaacttaaaattatttaaagga 18829  T

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Target: scaffold0118 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0118
Description:

Target: scaffold0118; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 43612 - 43678
Alignment:
Q  39 ggactaaaacatgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaa 105  Q
    ||||| ||||||  ||||||||| ||||||||||||||| |||||| |||||||||| | |||||||    
T  43612 ggacttaaacatacgttttattaattatgggaccaaaataaaaacttaaaattatttgagggaccaa 43678  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 104
Target Start/End: Complemental strand, 124034 - 123983
Alignment:
Q  53 gttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggacca 104  Q
    ||||||||| || |||||||||||||||||||  ||||||||| ||||||||    
T  124034 gttttattaattgtgggaccaaaatgaaaacttgaaattatttgaaggacca 123983  T

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Target: scaffold0114 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 38608 - 38532
Alignment:
Q  50 tgagttttattacttatgggaccaaaatgaaaactgaaaattatttaaaggaccaaatgccctcttaagcctatatt 126  Q
    |||||||||  | |||||||||||||||| ||||| | |||||||||  |||||||||| ||  ||||||| |||||    
T  38608 tgagttttacaatttatgggaccaaaatggaaactcataattatttaggggaccaaatgtccaattaagccaatatt 38532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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