View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_2 (Length: 775)
Name: NF6698_low_2
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-105; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-105
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 33628412 - 33628614
Alignment:
| Q |
17 |
acatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaa |
116 |
Q |
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| T |
33628412 |
acatcatatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaa |
33628511 |
T |
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| Q |
117 |
attattgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctatcat |
216 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
33628512 |
attgttgatgtattttttgaaacattatatgtactatttcttatatttgtactagattttttaaaattcagttttgtttagatttgataaaatctataat |
33628611 |
T |
|
| Q |
217 |
tca |
219 |
Q |
| |
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||| |
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| T |
33628612 |
tca |
33628614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 69 - 353
Target Start/End: Original strand, 33624556 - 33624844
Alignment:
| Q |
69 |
cggagaaggaaatcatccatgaagtttgcatgcaaaattgaaagaaaaat-tattgatgtattttttgaaacattatatgtactatttcttatatttgta |
167 |
Q |
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| T |
33624556 |
cggagaaggaaatcgtccatgaagtttgtatacaaacatgaaagaaaaaaatgttgatatattctttgaaaaaatatat--actatttcttatattagtg |
33624653 |
T |
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| Q |
168 |
ctagattttttaa-aattcagttttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgt |
266 |
Q |
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| T |
33624654 |
ctatattttttcagaagtcaatgttgcttagatttgatgaaatctataattcatagttgttaggagttcacttgtgttaaaggttagttaagaagtgtgt |
33624753 |
T |
|
| Q |
267 |
taataattgagagtttttagcaagttaattagcatgtgtgagtgtatat----ttaacaccacaatgcaataagaatgtaatcttcatgat |
353 |
Q |
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| T |
33624754 |
taataattgagagtttttagcaagttaattagaatgtgtgagtgtatataagcttaacaccacaatgcaattagaatgaaattttcatgat |
33624844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 374 - 621
Target Start/End: Original strand, 33624884 - 33625136
Alignment:
| Q |
374 |
tttccttcttttctttgctatacacgttccttttagaattcat----taagcaagatttatcgcaacaaattggtatcaaagagcattggttcgattcaa |
469 |
Q |
| |
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||||||| |||||||| |||||||| || ||||| ||||||| |||| |||||||||| | |||||||| |||| ||||| || ||||||||| || |
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| T |
33624884 |
tttccttgttttctttcctatacactttaattttacaattcatcaattaagaaagatttatccccacaaattgctatctaagagtat-ggttcgatttaa |
33624982 |
T |
|
| Q |
470 |
gctttc-gtcaatggcaaatggaagcacaacctcaaaccaattccc-tgcaaatctgctagttttcaaagaagaacactatgacagatggtgcgcacata |
567 |
Q |
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| T |
33624983 |
gctttatgtcgatagcgaatggaagatcaacctcaaaccaatccccatgtaaatctgtaagtttttaaaggagaacattatgagagatggtgcgcacata |
33625082 |
T |
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| Q |
568 |
tgagagtcatattcacgtttcaagatgttcttgagatcgtgaatgatggcatac |
621 |
Q |
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| T |
33625083 |
tgagagtcatattcaagcttcaagattttcttgagatcgtaaatgatggcatac |
33625136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 464 - 510
Target Start/End: Original strand, 33628610 - 33628656
Alignment:
| Q |
464 |
attcaagctttcgtcaatggcaaatggaagcacaacctcaaaccaat |
510 |
Q |
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| T |
33628610 |
attcaagctttcgtcaatggcaaatggaagcacaacctcaaaccaat |
33628656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 33609931 - 33610006
Alignment:
| Q |
21 |
catatggggtaaacattggttttggtatcggtttgttaaaggagaagacggagaaggaaatcatccatgaagtttg |
96 |
Q |
| |
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|||||||| |||||||||||||||| ||| ||||||||||||||||| | ||| ||||||||||||||||||| |
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| T |
33609931 |
catatgggaaaaacattggttttggtgtcgatttgttaaaggagaagatcgtcaagaaaatcatccatgaagtttg |
33610006 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 572 - 621
Target Start/End: Complemental strand, 1744832 - 1744783
Alignment:
| Q |
572 |
agtcatattcacgtttcaagatgttcttgagatcgtgaatgatggcatac |
621 |
Q |
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||||||||| | ||||||||||||| ||| ||||||||||||||||||| |
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| T |
1744832 |
agtcatatttagatttcaagatgttcctgaaatcgtgaatgatggcatac |
1744783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 190 - 286
Target Start/End: Complemental strand, 12059882 - 12059786
Alignment:
| Q |
190 |
ttgtttagatttgataaaatctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttag |
286 |
Q |
| |
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|||||| |||||||| ||||| || |||||||||||||| ||||| |||||||||| | |||||||||||||||||||| || |||||| |||||| |
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| T |
12059882 |
ttgtttggatttgatcaaatccataattcatagttgttacgagtttacttgtgttacaggttagttaagaagtttgttattagatgagagattttag |
12059786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 197 - 316
Target Start/End: Complemental strand, 12053171 - 12053055
Alignment:
| Q |
197 |
gatttgataaaa-tctatcattcatagttgttaggagttcacttgtgttaaaagttagttaagaagtttgttaataattgagagtttttagcaagttaat |
295 |
Q |
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|||||||||||| || || |||||||||||||||||||| |||||||||| | ||||||||||| ||||| || |||||| |||||||||||| | |
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| T |
12053171 |
gatttgataaaaatccataattcatagttgttaggagtttacttgtgttaca----agttaagaagtatgttagtagttgagaaattttagcaagtttct |
12053076 |
T |
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| Q |
296 |
tagcatgtgtgagtgtatatt |
316 |
Q |
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||| | |||||||||||||| |
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| T |
12053075 |
tagtaattgtgagtgtatatt |
12053055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 697 - 757
Target Start/End: Original strand, 36867638 - 36867698
Alignment:
| Q |
697 |
tgttcttgatccattagtgtgtgggttcaaacatctttgagaagatcattgaggaagaaac |
757 |
Q |
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|||| |||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||| |
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| T |
36867638 |
tgttattgatccattagtgtgagggttcaaacatcttcaagaagataattgatgaagaaac |
36867698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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