View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_20 (Length: 496)
Name: NF6698_low_20
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 20 - 484
Target Start/End: Original strand, 34434630 - 34435094
Alignment:
| Q |
20 |
ccaaatacttgtctgccaattgaactctcttcacattttcttgttcttggacaagcatgttaccatactccaacagtttctccaaactcatcttgggttg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34434630 |
ccaaatacttgtctgccaattgaactctcttcacattttcttgttcttggacaagcatgttaccatactccaacagtttctccaaactcatcttgggttg |
34434729 |
T |
|
| Q |
120 |
atcaaaagttggaggtccttcttttgagttcacaagctttttcccaatggtttcaatgccaacaccagcaatccactttctcacttcatcatcgtatact |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34434730 |
atcaaaagttggaggtccttcttttgagttcacaagctttttcccaatggtttcaatgccaacaccagcaatccactttctcacttcatcatcatatact |
34434829 |
T |
|
| Q |
220 |
cttgccctaagtgcaccaaagaaatctgtaaaaaataagagagttgagccaacagtcgatttgtcgggtccaaattttgaatcaaatacataatttttta |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34434830 |
cttgccctaagtgcaccaaagaaatctgtaaaaaataagagagttgagccaacagtcgatttgtcgggtccaaattttgaatcaaatacataatttttta |
34434929 |
T |
|
| Q |
320 |
tgaccgaactttctcttatttataagatcgaatgaagtaattaaaaaagtttcaacattctagaagagaacttaccaatggattgaccagggaaagtgtc |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34434930 |
tgaccgaactttctcttatttataagatcgaatgaagtaattaaaaaagtttcaacattctagaagagaacttaccaatggattgaccagggaaagtgtc |
34435029 |
T |
|
| Q |
420 |
aacaatcttaacaacatcttcctcaggaacattatcatgtctaaaaatccctttacaaacaccaa |
484 |
Q |
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| T |
34435030 |
aacaatcttaacaacatcttcctcaggaacattatcatgtctaaaaatccctttacaaacaccaa |
34435094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 30665347 - 30665574
Alignment:
| Q |
20 |
ccaaatacttgtctgccaattgaactctcttcacattttcttgttcttggacaagcatgttaccatactccaacagtttctccaaactcatcttgggttg |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || || || | ||||||| || || |
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| T |
30665347 |
ccaaatacttgtctgccaattgaactctcttcacattctcttgttctgagacaagcatgttaccatactccaatagcttttctagtgtcatctttggctg |
30665446 |
T |
|
| Q |
120 |
atcaaaagttggaggtccttcttttgagttcacaagctttttcccaatggtttcaatgccaacaccagcaatccactttctcacttcatcatcgtatact |
219 |
Q |
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||||| ||| ||||| || ||||||||||||||||| || ||||| |||||||| ||||| |||| || |||||| ||||||||||||||||| ||| |
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| T |
30665447 |
ctcaaacactggtggtccgtcctttgagttcacaagcttctttccaattgtttcaataccaactccagaaacccacttcctcacttcatcatcgtacact |
30665546 |
T |
|
| Q |
220 |
cttgccctaagtgcaccaaagaaatctg |
247 |
Q |
| |
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|| ||||| | |||||| |||||||||| |
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| T |
30665547 |
ctagccctcaatgcaccgaagaaatctg |
30665574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 28 - 167
Target Start/End: Original strand, 6852822 - 6852961
Alignment:
| Q |
28 |
ttgtctgccaattgaactctcttcacattttcttgttcttggacaagcatgttaccatactccaacagtttctccaaactcatcttgggttgatcaaaag |
127 |
Q |
| |
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||||| || ||||| || ||||||||||| |||||||||||||||||||| || |||||||| | ||||| || | | ||||||| ||||| ||||||| |
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| T |
6852822 |
ttgtcagctaattggaccctcttcacattctcttgttcttggacaagcatatttccatactctagtagtttgtcaatagtcatctttggttgctcaaaag |
6852921 |
T |
|
| Q |
128 |
ttggaggtccttcttttgagttcacaagctttttcccaat |
167 |
Q |
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|||||||||| |||||||| ||||||||| |||||||||| |
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| T |
6852922 |
ttggaggtccctcttttgaattcacaagccttttcccaat |
6852961 |
T |
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