View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_21 (Length: 490)

Name: NF6698_low_21
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_21
NF6698_low_21
[»] chr4 (3 HSPs)
chr4 (1-471)||(55119225-55119674)
chr4 (198-236)||(21236377-21236415)
chr4 (123-172)||(35947825-35947874)
[»] chr8 (1 HSPs)
chr8 (123-176)||(26172728-26172781)
[»] chr5 (3 HSPs)
chr5 (127-166)||(36018032-36018071)
chr5 (130-179)||(14627504-14627553)
chr5 (128-172)||(41248422-41248466)
[»] chr1 (2 HSPs)
chr1 (123-162)||(38580839-38580878)
chr1 (200-252)||(15242631-15242683)
[»] chr3 (2 HSPs)
chr3 (123-161)||(10877097-10877135)
chr3 (208-252)||(3747890-3747934)
[»] chr7 (1 HSPs)
chr7 (123-159)||(13043516-13043552)
[»] chr2 (1 HSPs)
chr2 (127-178)||(36676987-36677039)


Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 55119674 - 55119225
Alignment:
Q  1 aatgttagggcaaacatcaaggtaaagtgaacgtctaacatatatttacaaatcatctataaaaaggtcctaacgcaagcaacgagaattgaatcaacgg 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  55119674 aatgttagggcaaacatcaaggtaaagtgaacgtctaatatatatttacaaatcatccataaaaaggtcctaacgcaagcaacgagaattgaatcaacgg 55119575  T
Q  101 cttgataagtcaactctttatcaaccaagcaattgagttgaagtggttaatgagtttcaccaaagatgaattatttggaggaacccaggattcgatttgg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||    
T  55119574 cttgataagtcaactctttatcaaccaagcaattgagttgaagtggttaatgagtttcaccaaggatgaattattcggaggaacccagggttcgatttgg 55119475  T
Q  201 atggaataattcttggtgagactatccttacctcacagccaaactccggattgttatgcacttttccgctaatatgggaggattaacaccaaaaagattg 300  Q
    |||| |||||| ||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |    
T  55119474 atggtataatttttgttcagattatccttacctcacagccaaactccggattgttatgcccttttcccctaatatgggaggattaacaccaaaaagatcg 55119375  T
Q  301 actctttgccaaataatcaaacttattggctattttaatcaattttataaactgagttgtgtgagccatcaattaaactttatatgtttttcaaagaaaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    
T  55119374 actctttgccaaataatcaaacttattggctattttaatcaattttataaactgagttgtgtgagccatcaattaaactttata---------------- 55119291  T
Q  401 aactctataactcaaagatatcgttctatagcaatataataataacacgataaataagaatagtttatgct 471  Q
         |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  55119290 -----tataactcaaagatatcgttctatagcaatataatactaacacgataaataagaatagtttatgct 55119225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 198 - 236
Target Start/End: Complemental strand, 21236415 - 21236377
Alignment:
Q  198 tggatggaataattcttggtgagactatccttacctcac 236  Q
    |||||||||||||||||||| ||||||| ||||||||||    
T  21236415 tggatggaataattcttggtcagactatacttacctcac 21236377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 35947874 - 35947825
Alignment:
Q  123 aaccaagcaattgagttgaagtggttaatgagtttcaccaaagatgaatt 172  Q
    |||||||||||||| || |  ||||||||||||||||||||| |||||||    
T  35947874 aaccaagcaattgaattcagatggttaatgagtttcaccaaaaatgaatt 35947825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 123 - 176
Target Start/End: Original strand, 26172728 - 26172781
Alignment:
Q  123 aaccaagcaattgagttgaagtggttaatgagtttcaccaaagatgaattattt 176  Q
    ||||||| ||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  26172728 aaccaagtaattgagttcaagtggttaatgagtttcatcaatgatgaattattt 26172781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 36018071 - 36018032
Alignment:
Q  127 aagcaattgagttgaagtggttaatgagtttcaccaaaga 166  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  36018071 aagcaattgagttcaagtggttaatgagtttgaccaaaga 36018032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 14627504 - 14627553
Alignment:
Q  130 caattgagttgaagtggttaatgagtttcaccaaagatgaattatttgga 179  Q
    |||||||||| ||||| ||||||||||||| ||||||  |||||||||||    
T  14627504 caattgagttcaagtgattaatgagtttcatcaaagaccaattatttgga 14627553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 41248422 - 41248466
Alignment:
Q  128 agcaattgagttgaagtggttaatgagtttcaccaaagatgaatt 172  Q
    |||||||| ||| |||||||||||||||| ||| |||||||||||    
T  41248422 agcaattgtgtttaagtggttaatgagttccactaaagatgaatt 41248466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 162
Target Start/End: Original strand, 38580839 - 38580878
Alignment:
Q  123 aaccaagcaattgagttgaagtggttaatgagtttcacca 162  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  38580839 aaccaagcaattgagttcaaatggttaatgagtttcacca 38580878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 15242631 - 15242683
Alignment:
Q  200 gatggaataattcttggtgagactatccttacctcacagccaaactccggatt 252  Q
    ||||||| |||||| ||| ||||||| ||||||||||| || |||||||||||    
T  15242631 gatggaacaattctaggtcagactattcttacctcacaaccgaactccggatt 15242683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 161
Target Start/End: Original strand, 10877097 - 10877135
Alignment:
Q  123 aaccaagcaattgagttgaagtggttaatgagtttcacc 161  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  10877097 aaccaagcaattgagttcaagtggttaatgagcttcacc 10877135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 3747890 - 3747934
Alignment:
Q  208 aattcttggtgagactatccttacctcacagccaaactccggatt 252  Q
    |||||||||| |||||||| || |||||| |||||||||||||||    
T  3747890 aattcttggtcagactatcttttcctcacggccaaactccggatt 3747934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 159
Target Start/End: Complemental strand, 13043552 - 13043516
Alignment:
Q  123 aaccaagcaattgagttgaagtggttaatgagtttca 159  Q
    ||||||||||||||| | |||||||||||||||||||    
T  13043552 aaccaagcaattgagctcaagtggttaatgagtttca 13043516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 36677039 - 36676987
Alignment:
Q  127 aagcaattgagttgaagtggttaatgagtttcaccaaa-gatgaattatttgg 178  Q
    ||||||||||| | ||||||||||||||||| || ||| ||||||||||||||    
T  36677039 aagcaattgagctcaagtggttaatgagttttactaaatgatgaattatttgg 36676987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University