View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_26 (Length: 470)
Name: NF6698_low_26
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 462
Target Start/End: Complemental strand, 12760362 - 12759899
Alignment:
| Q |
3 |
ggtaaatatgaatacaatttattttaagcaataataatggttttttagttgtgatggccgagatttaaatctcaagctttacaaatattatgttattatc |
102 |
Q |
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| T |
12760362 |
ggtaagtatgagtacaatttattttaaacaataataatggttttttagttgtggtggtcgaggtttgaatctaaaattttacgtacattatattattgtg |
12760263 |
T |
|
| Q |
103 |
gttatcaactgagttaaagctga----------acagtgatggtttgctggctaggagacacacgtgaacagctaaaatgaatgctttcaattcttgtca |
192 |
Q |
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| T |
12760262 |
tttatcaactgagttaaagctcacgaggatgcaacagtgatggtatcctggctaggagacacacgtgaacagctaaaatgaatgctttcaattcttgtca |
12760163 |
T |
|
| Q |
193 |
actttttcaagtttggagttaaataataacaccgggactggaccggaccgccggactcttttatcttaacgtggaaaacgcttcttcttataa-cacttt |
291 |
Q |
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| T |
12760162 |
actttttcaagttaggacttcaataataacacctggactggaccg-----ccggactcttttatcttaacgtggaaaacgcttcttcttataaacacttt |
12760068 |
T |
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| Q |
292 |
aattcttacaaattacaaattctttgataaaagttgaagtttatagtcatcattgggctttactgtttgcaaccttactttgaattactttctcttttgg |
391 |
Q |
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||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
12760067 |
aattcttacaaattacagatcctttgataaaagttgaagtttatagtcatcattgggctttactgtttgcaaccctactttgaattactttctcttttgg |
12759968 |
T |
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| Q |
392 |
ttttgtgtgggccagggttttgatcagcactgcatgcatgtgtttgatatatgtcgttatgaattatgatg |
462 |
Q |
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| T |
12759967 |
ttttgtgtgggccagggttttgatcagcactgcatgcatgtgtttg--atatgtcgttatgaattatgatg |
12759899 |
T |
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