View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_27 (Length: 458)
Name: NF6698_low_27
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_27 |
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| [»] scaffold0288 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 7 - 233
Target Start/End: Complemental strand, 29312094 - 29311868
Alignment:
| Q |
7 |
aatataaacaaatcaagcccctttcattctatagtacaggtgacatattattgacctaattcgcatttaataattttctaattcaatgaataagtacgat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29312094 |
aatataaacaaatcaagcccctttcattctatagtacatgtgacatattattgacctaattcgcatttaataattttctaattcaatgaataagtacgat |
29311995 |
T |
|
| Q |
107 |
ccaaaagcctagtgaaatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatt |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29311994 |
ccaaaagcctagtgaaatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatt |
29311895 |
T |
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| Q |
207 |
tcaaatttggtccaaacaatggtaaat |
233 |
Q |
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||||||||||| |||||||||||||| |
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| T |
29311894 |
tcaaatttggttaaaacaatggtaaat |
29311868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 25 - 211
Target Start/End: Original strand, 32572670 - 32572853
Alignment:
| Q |
25 |
ccctttcattctatagtacaggtgacatattattgacctaattcgcatttaataattttctaattcaatgaataagtacgatccaaaagcctagtgaaat |
124 |
Q |
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||||||||||| |||||||| ||| ||||||||| ||||||| |||||||||||||||||||||||||| |||||||| | || | ||| |||||| |
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| T |
32572670 |
ccctttcattccatagtacatgtggcatattattagcctaatttgcatttaataattttctaattcaatgcataagtacaa----aatgtctaatgaaat |
32572765 |
T |
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| Q |
125 |
gaaattgttaaaggaacattcaatcttcttcaatgaaaa-ttaatatgcaaatcaaatcatataaaagtcaaagtaacaaatttcaaa |
211 |
Q |
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| T |
32572766 |
gaaattgttaaaggaatatttgttcttcttcaatgaaaaattaagatgcaaatcaaataatataaaaatcaaagtaacacatttcaaa |
32572853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 148 - 207
Target Start/End: Complemental strand, 24476370 - 24476311
Alignment:
| Q |
148 |
tcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaattt |
207 |
Q |
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| T |
24476370 |
tcttcttcaatgaaaattaatatgcaaatcaaataatataaaagtcaaagtaacaaattt |
24476311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 29311839 - 29311782
Alignment:
| Q |
314 |
tccttaattttaattaaccagacactaacccccctacttaaacatcaatacaataaac |
371 |
Q |
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| T |
29311839 |
tccttaattttaattaaccagacactaactcccctacttaaatatcaatacgataaac |
29311782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 384 - 421
Target Start/End: Complemental strand, 29311753 - 29311716
Alignment:
| Q |
384 |
catcattaaagaccctaattgtctcttcaaccggagca |
421 |
Q |
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| T |
29311753 |
catcattaaagaccctaattgtctcttcaactggagca |
29311716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 7 - 225
Target Start/End: Original strand, 49318630 - 49318844
Alignment:
| Q |
7 |
aatataaacaaatcaagcccctttcattctatagtacaggtgacatattattgacctaattcgcatttaataattttctaattcaatgaataagtacgat |
106 |
Q |
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||||||||||| |||| |||||||||||||||| |||| | ||| |||| | | ||||| | |||||||||||||||||||||||| |||||||| | |
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| T |
49318630 |
aatataaacaattcaaccccctttcattctataatacacatagcatgttatggtc-taatttgtatttaataattttctaattcaatgcataagtacaa- |
49318727 |
T |
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| Q |
107 |
ccaaaagcctagtgaaatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagt-aacaaat |
205 |
Q |
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|||| ||| |||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
49318728 |
---aaagtctaatgaaatgaaattgttaaaggaatatttgctcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaaacaaat |
49318824 |
T |
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| Q |
206 |
ttcaaatttggtccaaacaa |
225 |
Q |
| |
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|||||||||| || |||||| |
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| T |
49318825 |
ttcaaatttgatcaaaacaa |
49318844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 4923539 - 4923472
Alignment:
| Q |
230 |
aaatggcactaacctcccttgaggtctattaaaatgatgtcactcacatcccctctaatttttaactagac |
300 |
Q |
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| T |
4923539 |
aaattgcacaaacctcccttgaggtttgttaaaatg---tcactcacaccccctcaaatttttaacaagac |
4923472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 22366 - 22170
Alignment:
| Q |
7 |
aatataaacaaatcaagcccctttcattctatagtacaggtgacatattattgacctaattcgcatttaataattttctaattcaatgaataagtacgat |
106 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||||| |||| ||||||| |
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| T |
22366 |
aatataaacaattcatcaccctttcattctatagtacatgtggcatgttattggcctaatttgcatttaataattttctaatttaatgcataagta---- |
22271 |
T |
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| Q |
107 |
ccaaaagcctagtgaaatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatt |
206 |
Q |
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| T |
22270 |
caaaaagtctaatgaaatgaaattgttaaaggaa----------tatttaatgaaaattaatatgcaaatcaaatcaaatcaaagtcaaagtaacaaatt |
22181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 7 - 217
Target Start/End: Complemental strand, 4662196 - 4662000
Alignment:
| Q |
7 |
aatataaacaaatcaagcccctttcattctatagtacaggtgacatattattgacctaattcgcatttaataattttctaattcaatgaataagtacgat |
106 |
Q |
| |
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||||||||||| ||| |||||||||||||||||||| ||| ||| |||||| ||||||| ||||||||||||||||||||| |||| ||||||| |
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| T |
4662196 |
aatataaacaattcatcaccctttcattctatagtacatgtggcatgttattggcctaatttgcatttaataattttctaatttaatgcataagta---- |
4662101 |
T |
|
| Q |
107 |
ccaaaagcctagtgaaatgaaattgttaaaggaacattcaatcttcttcaatgaaaattaatatgcaaatcaaatcatataaaagtcaaagtaacaaatt |
206 |
Q |
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| ||||| ||| |||||||||||||||||||||| | || |||||||||||||||||||||||||||| || ||||||||||||||||||| |
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| T |
4662100 |
caaaaagtctaatgaaatgaaattgttaaaggaa----------tatttaatgaaaattaatatgcaaatcaaatcaaatcaaagtcaaagtaacaaatt |
4662011 |
T |
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