View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_28 (Length: 457)

Name: NF6698_low_28
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_28
NF6698_low_28
[»] chr5 (19 HSPs)
chr5 (1-439)||(7840690-7841126)
chr5 (18-90)||(13309885-13309958)
chr5 (18-90)||(1079948-1080020)
chr5 (31-90)||(35473326-35473386)
chr5 (35-90)||(5721830-5721885)
chr5 (10-90)||(39807701-39807782)
chr5 (18-90)||(22649657-22649729)
chr5 (12-90)||(11954434-11954513)
chr5 (10-64)||(14321942-14321996)
chr5 (5-59)||(19844291-19844345)
chr5 (5-62)||(26686913-26686970)
chr5 (5-62)||(26956644-26956701)
chr5 (33-62)||(35567532-35567561)
chr5 (18-62)||(14532536-14532580)
chr5 (18-90)||(19521999-19522071)
chr5 (18-54)||(31683491-31683527)
chr5 (31-71)||(32639065-32639105)
chr5 (18-90)||(33037523-33037595)
chr5 (18-62)||(33598994-33599038)
[»] chr3 (36 HSPs)
chr3 (10-90)||(10811138-10811219)
chr3 (10-90)||(33374495-33374576)
chr3 (18-90)||(33939239-33939311)
chr3 (36-90)||(52326022-52326076)
chr3 (5-90)||(44413903-44413988)
chr3 (31-63)||(9692756-9692788)
chr3 (18-90)||(26014815-26014887)
chr3 (18-90)||(36671010-36671082)
chr3 (35-90)||(40367611-40367667)
chr3 (18-90)||(41505494-41505566)
chr3 (18-90)||(46623910-46623982)
chr3 (18-90)||(47472332-47472404)
chr3 (10-90)||(13348122-13348204)
chr3 (33-72)||(31014215-31014254)
chr3 (31-90)||(37302549-37302608)
chr3 (35-90)||(44813137-44813192)
chr3 (35-90)||(44855956-44856011)
chr3 (12-90)||(13735132-13735210)
chr3 (10-64)||(44463386-44463440)
chr3 (37-90)||(5114081-5114134)
chr3 (10-90)||(28920037-28920118)
chr3 (18-90)||(34456793-34456866)
chr3 (35-64)||(52714763-52714792)
chr3 (39-90)||(4494253-4494305)
chr3 (18-90)||(5244232-5244304)
chr3 (18-90)||(6178421-6178493)
chr3 (35-75)||(7933931-7933971)
chr3 (41-89)||(16129526-16129574)
chr3 (10-62)||(26772400-26772452)
chr3 (18-90)||(28539736-28539808)
chr3 (35-90)||(33389011-33389067)
chr3 (18-90)||(35597165-35597237)
chr3 (18-90)||(38926631-38926703)
chr3 (18-90)||(45711435-45711507)
chr3 (43-90)||(48612780-48612828)
chr3 (35-90)||(49417578-49417634)
[»] chr6 (12 HSPs)
chr6 (18-90)||(5694147-5694219)
chr6 (35-90)||(14817935-14817990)
chr6 (14-90)||(34047390-34047466)
chr6 (17-90)||(5570328-5570401)
chr6 (8-64)||(2242007-2242063)
chr6 (18-90)||(22079559-22079631)
chr6 (18-90)||(25811834-25811906)
chr6 (25-90)||(34442065-34442131)
chr6 (35-99)||(9083074-9083138)
chr6 (18-94)||(5080563-5080639)
chr6 (35-75)||(31869085-31869125)
chr6 (31-90)||(32459525-32459585)
[»] chr2 (28 HSPs)
chr2 (10-90)||(19109081-19109161)
chr2 (18-94)||(9194240-9194316)
chr2 (35-90)||(4384058-4384113)
chr2 (10-64)||(16799702-16799756)
chr2 (5-90)||(38821369-38821455)
chr2 (10-90)||(6511254-6511334)
chr2 (18-90)||(18254205-18254277)
chr2 (35-90)||(26206850-26206906)
chr2 (18-102)||(27490726-27490810)
chr2 (35-90)||(22888834-22888889)
chr2 (35-90)||(44287453-44287508)
chr2 (17-90)||(25094355-25094428)
chr2 (18-64)||(33616495-33616541)
chr2 (25-87)||(37003617-37003679)
chr2 (36-90)||(43487382-43487436)
chr2 (35-64)||(2221023-2221052)
chr2 (18-59)||(4228934-4228975)
chr2 (18-90)||(9760020-9760093)
chr2 (10-90)||(16447234-16447314)
chr2 (8-64)||(7502413-7502469)
chr2 (35-90)||(8427555-8427611)
chr2 (18-90)||(9207593-9207665)
chr2 (31-59)||(9377491-9377519)
chr2 (18-90)||(9990694-9990766)
chr2 (31-90)||(15269864-15269924)
chr2 (18-90)||(22446024-22446096)
chr2 (35-90)||(31578437-31578493)
chr2 (35-90)||(40210080-40210136)
[»] chr7 (17 HSPs)
chr7 (31-102)||(32529863-32529934)
chr7 (33-90)||(40112965-40113022)
chr7 (35-90)||(31398127-31398182)
chr7 (35-103)||(6269356-6269425)
chr7 (10-90)||(44496790-44496871)
chr7 (18-90)||(47448829-47448902)
chr7 (18-90)||(30941389-30941461)
chr7 (18-70)||(42552923-42552975)
chr7 (35-90)||(24614329-24614384)
chr7 (31-90)||(44895581-44895640)
chr7 (10-64)||(49069279-49069333)
chr7 (26-90)||(37352113-37352178)
chr7 (10-90)||(2300082-2300167)
chr7 (35-90)||(9792769-9792825)
chr7 (17-65)||(35212950-35212997)
chr7 (35-90)||(42598220-42598276)
chr7 (43-90)||(43482527-43482575)
[»] chr4 (27 HSPs)
chr4 (5-103)||(44539727-44539824)
chr4 (5-90)||(56557736-56557822)
chr4 (18-90)||(10250511-10250583)
chr4 (10-90)||(27051074-27051154)
chr4 (18-90)||(43174987-43175059)
chr4 (19-90)||(336804-336875)
chr4 (1-59)||(40590635-40590693)
chr4 (27-101)||(45082973-45083047)
chr4 (31-64)||(2738276-2738309)
chr4 (18-90)||(39478438-39478510)
chr4 (18-70)||(45761240-45761292)
chr4 (5-64)||(37060347-37060406)
chr4 (35-90)||(38134356-38134411)
chr4 (8-50)||(5466481-5466523)
chr4 (1-59)||(6239414-6239472)
chr4 (18-60)||(11546896-11546938)
chr4 (18-100)||(26910196-26910277)
chr4 (20-57)||(32696218-32696255)
chr4 (33-90)||(50050641-50050698)
chr4 (18-90)||(5622461-5622533)
chr4 (10-50)||(18518439-18518479)
chr4 (38-90)||(23369348-23369400)
chr4 (5-65)||(26492037-26492097)
chr4 (18-90)||(37297052-37297124)
chr4 (35-90)||(38519796-38519852)
chr4 (38-90)||(46212973-46213025)
chr4 (31-90)||(53654758-53654818)
[»] scaffold0056 (1 HSPs)
scaffold0056 (35-96)||(76632-76693)
[»] chr1 (18 HSPs)
chr1 (1-95)||(37139901-37139996)
chr1 (5-90)||(37685334-37685419)
chr1 (5-90)||(37700099-37700184)
chr1 (35-90)||(1689394-1689450)
chr1 (18-90)||(12657225-12657297)
chr1 (18-94)||(30735289-30735365)
chr1 (18-90)||(40861256-40861328)
chr1 (35-90)||(8350209-8350264)
chr1 (18-64)||(50775152-50775198)
chr1 (18-90)||(9566956-9567029)
chr1 (31-64)||(38713600-38713633)
chr1 (4-64)||(3558876-3558936)
chr1 (4-64)||(30536021-30536081)
chr1 (35-90)||(32915084-32915140)
chr1 (18-90)||(33100811-33100883)
chr1 (18-90)||(35369703-35369775)
chr1 (18-90)||(37275029-37275101)
chr1 (35-90)||(47214211-47214267)
[»] chr8 (13 HSPs)
chr8 (1-59)||(6511838-6511896)
chr8 (31-100)||(34810650-34810719)
chr8 (35-90)||(28772136-28772192)
chr8 (35-90)||(27325761-27325816)
chr8 (4-90)||(33100450-33100537)
chr8 (35-90)||(38578377-38578432)
chr8 (10-63)||(34639563-34639616)
chr8 (17-70)||(36786796-36786849)
chr8 (18-90)||(4054282-4054354)
chr8 (18-90)||(10902708-10902780)
chr8 (10-50)||(11114657-11114697)
chr8 (10-78)||(34186622-34186690)
chr8 (18-90)||(43397784-43397856)
[»] scaffold0041 (1 HSPs)
scaffold0041 (18-90)||(10959-11031)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-90)||(366297-366368)


Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 7840690 - 7841126
Alignment:
Q  1 aaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaatt 100  Q
    |||||||| ||||||||||||||||||||  || ||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||| | |||||||    
T  7840690 aaataatagagagaagataaaaacacaatccgagtataagagataaagttatcacaaaaattgtataaaatagttagttaaatatcatttctttctaatt 7840789  T
Q  101 taacagcatcgactaaatttaaatatagtttgtcacgagatttggcactggctgtaagttcacaagaatttctcgcgnnnnnnntgctatgcttggcttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  7840790 taacagcatcgactaaatttaaatatagtttgtcacgagatttggcactggctgtaagttcacaagaatttctcgcgaaaaaaatgctatgcttggcttc 7840889  T
Q  201 ctgaccacggtgtatcaatgtacattaaattaaattaaatggtgcattccagcaaaattgctannnnnnnnccaacnnnnnnnnnnnngaaccaaaatat 300  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||        |||||            |||||||| |||    
T  7840890 ctgaccacggtgtatcaatgtacattaaattaaattaaacggtgcattccagcaaaattgcta-tttttttccaac-aaaaaaaaaaagaaccaaattat 7840987  T
Q  301 tgtaacaatctccaatcacaaaattttgtccgtgtctatagcatgatcatggactcaaattcagggttatagagtatggaccaccaatgaaacgcataaa 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7840988 tgtaacaatctccaatcacaaaattttgtccgtgtctatagcatgatcatggactcaaattcagggttatagagtatggaccaccaatgaaacgcataaa 7841087  T
Q  401 agagattaaaagtgagggggtggggtttaccttttacct 439  Q
    |||||||||||||||||| |||||||||| |||||||||    
T  7841088 agagattaaaagtgagggcgtggggtttaacttttacct 7841126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 13309958 - 13309885
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||| | |||||||||  |||||||||||||    
T  13309958 taaaaacataatgtgaatatgagagagaaagttatcacaaaaattgtcaaaaaatagttgttcaaatatcattt 13309885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 1079948 - 1080020
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| |||||||||||||||||||| |||||||||||||| |||||| ||  |||||||||||||    
T  1079948 taaaaagataatgtgaatatgagagagaaagttgtcacaaaaattgtaaaaaataattgttcaaatatcattt 1080020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 35473386 - 35473326
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||||||| ||||||||||| | ||||||||| || |||||||||||||    
T  35473386 tgaatatgagagagaaagttgtcacaaaaattatcataaaatagatattcaaatatcattt 35473326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 5721830 - 5721885
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||| |||||| |||||||||||||| |||||||||  |||||||||||||    
T  5721830 tatgagagataaagttgtcacaaaaattgtaaaaaatagttgttcaaatatcattt 5721885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 39807701 - 39807782
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagag-aaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||| | ||||||| |||||||||| |||||| ||| |||||||||| ||||| |||  |||||||||||||    
T  39807701 agagaaaataaaaagataatttgagtatgagagagtaaagttgtcataaaaattgtaaaaaatggttgttcaaatatcattt 39807782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22649657 - 22649729
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||||||| || |||||||||||||| ||||| |||  |||||||||||||    
T  22649657 taaaaagataatgtgagtatgagagagaaaattgtcacaaaaattgtaaaaaatggttgttcaaatatcattt 22649729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 11954513 - 11954434
Alignment:
Q  12 agaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataa-aatagttagtcaaatatcattt 90  Q
    |||| ||||||  ||||| ||| |||||||||||||||| ||||||||||| || || |||||||  |||||||||||||    
T  11954513 agaaaataaaataacaatgtgagtatgagagagaaagttgtcacaaaaattataaaacaatagttgttcaaatatcattt 11954434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 14321942 - 14321996
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||| ||||| | ||||| |||||||||||||||||||| |||||||| ||||    
T  14321942 agagaaaataaatatacaatatgaatatgagagagaaagttgtcacaaaagttgt 14321996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 59
Target Start/End: Original strand, 19844291 - 19844345
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 59  Q
    |||| ||||||  |||||||| ||| || ||||||||||||||||||||||||||    
T  19844291 aatagagagaaagtaaaaacataatgtggatatgagagagaaagttatcacaaaa 19844345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 26686970 - 26686913
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 62  Q
    |||| ||||||  |||||| | ||| |||||||||||||||||||| |||||||||||    
T  26686970 aatagagagaaagtaaaaatataatgtgaatatgagagagaaagttgtcacaaaaatt 26686913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 5 - 62
Target Start/End: Complemental strand, 26956701 - 26956644
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 62  Q
    |||| ||||||  |||||| | ||| |||||||||||||||||||| |||||||||||    
T  26956701 aatagagagaaagtaaaaatataatgtgaatatgagagagaaagttgtcacaaaaatt 26956644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 62
Target Start/End: Complemental strand, 35567561 - 35567532
Alignment:
Q  33 aatatgagagagaaagttatcacaaaaatt 62  Q
    ||||||||||||||||||||||||||||||    
T  35567561 aatatgagagagaaagttatcacaaaaatt 35567532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 14532580 - 14532536
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 62  Q
    |||||||| ||| ||| |||||||||||||||| |||||||||||    
T  14532580 taaaaacaaaatgtgagtatgagagagaaagttgtcacaaaaatt 14532536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 19521999 - 19522071
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||| |||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  19521999 taaaaagataatgtgagtatgaaagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 19522071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 31683491 - 31683527
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatca 54  Q
    |||||||| ||| ||||||||||||||||||||||||    
T  31683491 taaaaacataatatgaatatgagagagaaagttatca 31683527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 71
Target Start/End: Complemental strand, 32639105 - 32639065
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgtataaaat 71  Q
    |||||||||||||||||||| |||||||| ||||| |||||    
T  32639105 tgaatatgagagagaaagttgtcacaaaatttgtacaaaat 32639065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 33037595 - 33037523
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| ||| |||| ||||| ||||| |||  |||||||||||||    
T  33037595 taaaaagataatgtgagtatgagagagaaagttgtcataaaagttgtaaaaaatggttgttcaaatatcattt 33037523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 33599038 - 33598994
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 62  Q
    |||||||| ||| ||| ||||||| ||||||||||||||||||||    
T  33599038 taaaaacataatgtgagtatgagaaagaaagttatcacaaaaatt 33598994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 10811219 - 10811138
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    ||||||| |||||||||||| ||| |||||||||||||||| |||||||| |||| ||||||| |||  |||||||||||||    
T  10811219 agagaaggtaaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcataaaatggttgttcaaatatcattt 10811138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 33374576 - 33374495
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||| || |||| | ||| ||| |||||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||    
T  33374576 agagaaaatgaaaatataatgtgagtatgagagagaaagttatcataaaaattgtcataaaatggttattcaaatatcattt 33374495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 33939311 - 33939239
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| |||||||||||||||||||| ||||||||||| || ||||| |||  |||||||||||||    
T  33939311 taaaaagataatgtgaatatgagagagaaagttgtcacaaaaattataaaaaatggttgttcaaatatcattt 33939239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 52326076 - 52326022
Alignment:
Q  36 atgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||||||| |||||||| ||||| ||||| |||| |||||||||||||    
T  52326076 atgagagagaaagttgtcacaaaagttgtaaaaaatggttattcaaatatcattt 52326022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 44413903 - 44413988
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||| |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  ||| |||||||||    
T  44413903 aatagagagaaggtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaattgttgttcatatatcattt 44413988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 9692788 - 9692756
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattg 63  Q
    |||||||||||||||||||||||||||||||||    
T  9692788 tgaatatgagagagaaagttatcacaaaaattg 9692756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 26014887 - 26014815
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  26014887 taaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 26014815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 36671010 - 36671082
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||| |||||| |||||||||||||| ||||| |||  |||||||||||||    
T  36671010 taaaaagataatgtgagtatgagagaaaaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcattt 36671082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 40367667 - 40367611
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtat-aaaatagttagtcaaatatcattt 90  Q
    ||||||||||||| || ||||||||||||| | |||||||||| |||||||||||||    
T  40367667 tatgagagagaaaattgtcacaaaaattgtttaaaaatagttattcaaatatcattt 40367611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 41505566 - 41505494
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| |||||| ||  |||||||||||||    
T  41505566 taaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaataattgttcaaatatcattt 41505494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 46623982 - 46623910
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||||||| |||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  46623982 taaaaagataatgtgaatatcagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 46623910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 47472404 - 47472332
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  47472404 taaaaagataatatgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 47472332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 13348122 - 13348204
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattg--tataaaatagttagtcaaatatcattt 90  Q
    ||||||| |||||||| | | ||| ||||  |||||||||||||||||||||||  || |||||||||  |||||||||||||    
T  13348122 agagaaggtaaaaacatattgtgagtatggaagagaaagttatcacaaaaattgtctaaaaaatagttgttcaaatatcattt 13348204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 72
Target Start/End: Complemental strand, 31014254 - 31014215
Alignment:
Q  33 aatatgagagagaaagttatcacaaaaattgtataaaata 72  Q
    |||||| |||||||||||||||||||||||||| ||||||    
T  31014254 aatatgggagagaaagttatcacaaaaattgtacaaaata 31014215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 37302608 - 37302549
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||||||| |||||||| ||||| ||||| |||  | |||||||||||    
T  37302608 tgaatatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttaaaatatcattt 37302549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 44813192 - 44813137
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||| | |||||||||||||| |||||||||  | |||||||||||    
T  44813192 tatgagagagaaagctgtcacaaaaattgtaaaaaatagttgtttaaatatcattt 44813137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 44856011 - 44855956
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||||| |||||||| ||||| ||||| |||| |||||||||||||    
T  44856011 tatgagtgagaaagttgtcacaaaagttgtaaaaaattgttattcaaatatcattt 44855956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 12 - 90
Target Start/End: Complemental strand, 13735210 - 13735132
Alignment:
Q  12 agaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||| | ||| ||| ||||||| |||||||| |||||||||||||| ||||| |||  |||||||| ||||    
T  13735210 agaaaataaaaagataatatgagtatgagaaagaaagttgtcacaaaaattgtaaaaaatggttgttcaaatattattt 13735132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 44463440 - 44463386
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||| ||||||| | ||| ||| ||||||||||||||||||||||||| ||||    
T  44463440 agagaaaataaaaatataatgtgagtatgagagagaaagttatcacaaaagttgt 44463386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 37 - 90
Target Start/End: Complemental strand, 5114134 - 5114081
Alignment:
Q  37 tgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||| ||| |||||||||| ||||| |||  |||||||||||||    
T  5114134 tgagagagaaagttgtcaaaaaaattgtaaaaaatggttgttcaaatatcattt 5114081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 28920037 - 28920118
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt-gtataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||||  ||| ||| |||||||||||||||| |||||||||||  ||| ||||||||   ||||||||||||    
T  28920037 agagaaaataaaaacttaatatgagtatgagagagaaagttgtcacaaaaattattatcaaatagttgtacaaatatcattt 28920118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 34456866 - 34456793
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||||||||||||||||||| |||| | ||| | |||| |||||||||||||    
T  34456866 taaaaagataatatgagtatgagagagaaagttatcacaaaagttgtcaaaaagtggttattcaaatatcattt 34456793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 52714792 - 52714763
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt 64  Q
    ||||||||||||||||||||||||||||||    
T  52714792 tatgagagagaaagttatcacaaaaattgt 52714763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 4494253 - 4494305
Alignment:
Q  39 agagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||| ||||||||||| | | |||||||||| |||||||||||||    
T  4494253 agagagaaagttgtcacaaaaattatcaaaaaatagttattcaaatatcattt 4494305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 5244304 - 5244232
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| || || |||  |||||||||||||    
T  5244304 taaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaatatggttgttcaaatatcattt 5244232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 6178421 - 6178493
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| ||| ||||||||||||| || |||||||| ||||  |||||||||   ||||||||||||    
T  6178421 taaaaacataatgtgagtatgagagagaaaattgtcacaaaagttgtcaaaaatagttgtacaaatatcattt 6178493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 7933971 - 7933931
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagtt 75  Q
    ||||||||||||| ||||||||||| ||||| |||||||||    
T  7933971 tatgagagagaaaattatcacaaaagttgtaaaaaatagtt 7933931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 16129574 - 16129526
Alignment:
Q  41 agagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatt 89  Q
    ||||||||||||||||||| ||||| ||||| |||  ||||||||||||    
T  16129574 agagaaagttatcacaaaagttgtaaaaaatggttgttcaaatatcatt 16129526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 26772452 - 26772400
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaatt 62  Q
    |||||| |||||||   ||| |||||||||||||||||||| |||||||||||    
T  26772452 agagaaaataaaaatgtaatgtgaatatgagagagaaagttgtcacaaaaatt 26772400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 28539736 - 28539808
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| ||| | ||||| ||||| || ||||||||||| || |||||||||  |||||||||||||    
T  28539736 taaaaacataatatgagtgtgagaaagaaaattgtcacaaaaattataaaaaatagttgttcaaatatcattt 28539808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 33389067 - 33389011
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaa-tagttagtcaaatatcattt 90  Q
    |||||||||||||||| ||||||||||||| ||||| | |||  |||||||||||||    
T  33389067 tatgagagagaaagttgtcacaaaaattgtttaaaagtggttgttcaaatatcattt 33389011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 35597237 - 35597165
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||| ||||||||| |||||  ||  |||||||||||||    
T  35597237 taaaaaaataatgtgagtatgagagagaaagttgtcactaaaattgtaaaaaatgtttgttcaaatatcattt 35597165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 38926703 - 38926631
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||  ||||| ||||| |||  |||||||||||||    
T  38926703 taaaaagataatgtgagtatgagagagaaagttgtcacaaacgttgtaaaaaatggttgttcaaatatcattt 38926631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 45711435 - 45711507
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||||||| || |||||||| ||||| ||||| |||  |||||||||||||    
T  45711435 taaaaagataatgtgagtatgagagagaaaattgtcacaaaagttgtaaaaaattgttgttcaaatatcattt 45711507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 48612828 - 48612780
Alignment:
Q  43 agaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||||||||    
T  48612828 agaaagttattacaaaaattgtaataaaatagttatacaaatatcattt 48612780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 49417634 - 49417578
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||| |||| ||||||||| |  |||||||||||||    
T  49417634 tatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcattt 49417578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 5694147 - 5694219
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| ||||||||||| | ||| ||||||||||||||||| ||||| |||| |||||||||||||    
T  5694147 taaaaacataatgtgaatatgagaaataaaattatcacaaaaattgtaaaaaatggttattcaaatatcattt 5694219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 14817990 - 14817935
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||||||||| |||||||||  |||||||||||||    
T  14817990 tatgagagagaaagttgtcacaaaaattgtaaaaaatagttgttcaaatatcattt 14817935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 14 - 90
Target Start/End: Complemental strand, 34047466 - 34047390
Alignment:
Q  14 aagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  34047466 aagataaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 34047390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 5570328 - 5570401
Alignment:
Q  17 ataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||| | ||| ||| ||||||||||||| || |||||||||||||| ||||| |||  |||||||||||||    
T  5570328 ataaaaatataatgtgagtatgagagagaaaattgtcacaaaaattgtaaaaaatggttgttcaaatatcattt 5570401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 2242007 - 2242063
Alignment:
Q  8 atagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||||| ||||||||  ||| ||| |||||||||||||||| |||||||||||||    
T  2242007 atagagaaaataaaaacttaatgtgagtatgagagagaaagttgtcacaaaaattgt 2242063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22079559 - 22079631
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| ||| | |||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  22079559 taaaaacataatgtgagtgtgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 22079631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 25811834 - 25811906
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  25811834 taaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 25811906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 34442065 - 34442131
Alignment:
Q  25 acaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    ||||| ||| ||||||||||||| || |||||||| |||| |||||||||||  |||||||||||||    
T  34442065 acaatgtgagtatgagagagaaaattgtcacaaaagttgtcataaaatagttgctcaaatatcattt 34442131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 99
Target Start/End: Original strand, 9083074 - 9083138
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcatttatctctaat 99  Q
    ||||||||||||| |||||||||||||||| | ||||||||||  |||||||||||| ||| ||||    
T  9083074 tatgagagagaaa-ttatcacaaaaattgttaaaaaatagttatacaaatatcatttctctttaat 9083138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 5080563 - 5080639
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatct 94  Q
    |||||| | ||| ||| ||||| |||||||||| |||||||| ||||| ||| | |||  |||||||||||||||||    
T  5080563 taaaaaaataatgtgagtatgaaagagaaagttgtcacaaaagttgtaaaaagtggttgttcaaatatcatttatct 5080639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 31869125 - 31869085
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagtt 75  Q
    |||||||||||||||| |||||||| ||||| |||||||||    
T  31869125 tatgagagagaaagttgtcacaaaagttgtacaaaatagtt 31869085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 32459525 - 32459585
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||||||| |||||||| |||| ||||||| | |  |||||||||||||    
T  32459525 tgaatatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 32459585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 19109081 - 19109161
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||| | ||| | | ||||||||||||| ||||||||||||||||| |||||||||  |||||||||||||    
T  19109081 agagaaaataaaaagataatgtaagtatgagagagaaatttatcacaaaaattgtaaaaaatagttgttcaaatatcattt 19109161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 9194316 - 9194240
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatct 94  Q
    |||||| | ||| ||| |||||||||||||| | |||||||||||||| |||||||||   ||||||||||||||||    
T  9194316 taaaaagataatgtgagtatgagagagaaagatgtcacaaaaattgtaaaaaatagttgtccaaatatcatttatct 9194240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 4384113 - 4384058
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||||||||| ||||||| |  |||||||||||||    
T  4384113 tatgagagagaaagttgtcacaaaaattgtacaaaatagatgttcaaatatcattt 4384058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 16799756 - 16799702
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||| ||||||| | ||| ||| ||||||||||||||||||||||||||||||    
T  16799756 agagaaaataaaaatataatatgagtatgagagagaaagttatcacaaaaattgt 16799702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 38821455 - 38821369
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||| |||||||||||| ||| ||||||| ||||| || |||||||| |||| ||||||| |||  |||||||||||||    
T  38821455 aatagagagaaggtaaaaacacaatgtgagtatgagaaagaaaattgtcacaaaagttgtcataaaatggttgttcaaatatcattt 38821369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 6511334 - 6511254
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||| | ||| ||| |||||||||||||||| |||| ||| ||||| ||||| |||  |||||||||||||    
T  6511334 agagaaaataaaaagataatgtgagtatgagagagaaagttgtcactaaagttgtaaaaaatggttgttcaaatatcattt 6511254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 18254205 - 18254277
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  18254205 taaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 18254277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 26206906 - 26206850
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||||| ||||||||||| ||||||||| |  |||||||||||||    
T  26206906 tatgagagagaaagttataacaaaaattgtcataaaatagatgttcaaatatcattt 26206850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 102
Target Start/End: Original strand, 27490726 - 27490810
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaattta 102  Q
    |||||||| ||| ||| | |||||||||||||| |||||||| ||||  ||||| |||  ||||||||||||| ||| |||||||    
T  27490726 taaaaacataatatgagtgtgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcatttctctttaattta 27490810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 22888834 - 22888889
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||||||||  ||||| |||  |||||||||||||    
T  22888834 tatgagagagaaagttgtcacaaaaattgtcaaaaatggttgttcaaatatcattt 22888889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 44287453 - 44287508
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||| ||| ||||||||||| ||||| |||||||||  |||||||||||||    
T  44287453 tatgagagaaaaaattatcacaaaagttgtaaaaaatagttgttcaaatatcattt 44287508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 25094428 - 25094355
Alignment:
Q  17 ataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgta-taaaatagttagtcaaatatcattt 90  Q
    ||||||||| ||| |||||||||||||||||||| | ||||||||||||  ||||| ||||  ||||||||||||    
T  25094428 ataaaaacataatgtgaatatgagagagaaagttgt-acaaaaattgtaccaaaatggttatacaaatatcattt 25094355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 33616541 - 33616495
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||| | ||| ||||||||||||||||||||||||||||| ||||    
T  33616541 taaaaatataatatgaatatgagagagaaagttatcacaaaatttgt 33616495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 37003679 - 37003617
Alignment:
Q  25 acaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatca 87  Q
    ||||| ||| |||||||||||||||| ||||||||||  || |||||||||  ||||||||||    
T  37003679 acaatgtgagtatgagagagaaagttgtcacaaaaatattaaaaaatagttgttcaaatatca 37003617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 90
Target Start/End: Complemental strand, 43487436 - 43487382
Alignment:
Q  36 atgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||||||| ||||||||||| || ||||| |||  |||||||||||||    
T  43487436 atgagagagaaagttgtcacaaaaattataaaaaatggttgttcaaatatcattt 43487382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 2221052 - 2221023
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt 64  Q
    ||||||||||||||||||||||||||||||    
T  2221052 tatgagagagaaagttatcacaaaaattgt 2221023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 4228934 - 4228975
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaa 59  Q
    |||||||||||| |||||| |||||| |||||||||||||||    
T  4228934 taaaaacacaatgtgaatacgagagaaaaagttatcacaaaa 4228975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 9760093 - 9760020
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaa-ttgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| ||||||||| ||||| ||||| |||  |||||||||||||    
T  9760093 taaaaagataatgtgagtatgagagagaaagttgtcacaaaaagttgtaaaaaatggttgttcaaatatcattt 9760020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 16447234 - 16447314
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||| | ||| ||||||||||||||||| |||||| ||||||||| ||||||| |||   ||||||||||||    
T  16447234 agagaaaataaaaatataatgtgaatatgagagagaaaattatca-aaaaattgtaataaaatggttgtacaaatatcattt 16447314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 7502413 - 7502469
Alignment:
Q  8 atagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    ||||||||  ||||||||  || ||| |||||||||||||||| |||||||||||||    
T  7502413 atagagaaagtaaaaacattatatgagtatgagagagaaagttgtcacaaaaattgt 7502469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 8427611 - 8427555
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| ||||||||||||| | ||||||| |  |||||||||||||    
T  8427611 tatgagagagaaagttgtcacaaaaattgtcaaaaaatagatgttcaaatatcattt 8427555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 9207665 - 9207593
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| |||||  ||  |||||||||||||    
T  9207665 taaaaaaataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcattt 9207593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 59
Target Start/End: Complemental strand, 9377519 - 9377491
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaa 59  Q
    |||||||||||||||||||||||||||||    
T  9377519 tgaatatgagagagaaagttatcacaaaa 9377491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 9990766 - 9990694
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||| |||||||||||| |||||||| ||||| ||| |||||  |||||||||||||    
T  9990766 taaaaagataatgtgagtataagagagaaagttgtcacaaaagttgtaaaaattagttgttcaaatatcattt 9990694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Complemental strand, 15269924 - 15269864
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    ||||||||| |||||||||| ||||||||||||| ||||||| | |  |||||||||||||    
T  15269924 tgaatatgaaagagaaagttgtcacaaaaattgtcataaaatggatgttcaaatatcattt 15269864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 22446024 - 22446096
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||| |||||||||||||||||||||||| |  |||||| ||| ||| |||||||||    
T  22446024 taaaaaaataatatgagtataagagagaaagttatcacaaaaattatcaaaaataattaatcatatatcattt 22446096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 31578493 - 31578437
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaa-tagttagtcaaatatcattt 90  Q
    ||||||||| |||||| ||||||||| ||| ||||| |||||| |||||||||||||    
T  31578493 tatgagagaaaaagttgtcacaaaaactgtctaaaaatagttattcaaatatcattt 31578437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 40210080 - 40210136
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtat-aaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| ||||||||||| | | |||||||||  |||||||||||||    
T  40210080 tatgagagagaaagttgtcacaaaaattatttaaaaatagttgttcaaatatcattt 40210136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 102
Target Start/End: Original strand, 32529863 - 32529934
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaattta 102  Q
    |||||||||||||||||||| | |||||| || || |||||||||  ||||||||||||||||| |||||||    
T  32529863 tgaatatgagagagaaagttgttacaaaagttataaaaaatagttgttcaaatatcatttatctttaattta 32529934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 90
Target Start/End: Original strand, 40112965 - 40113022
Alignment:
Q  33 aatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||||||| || |||||||||||||| |||||||||  |||||||||||||    
T  40112965 aatatgagagagaaaattctcacaaaaattgtaaaaaatagttgttcaaatatcattt 40113022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 31398182 - 31398127
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||||||||||||||||| ||||||||||| |||   ||||||||||||    
T  31398182 tatgagagagaaagttatcacaaaagttgtataaaatggttgtacaaatatcattt 31398127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 35 - 103
Target Start/End: Complemental strand, 6269425 - 6269356
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattg-tataaaatagttagtcaaatatcatttatctctaatttaa 103  Q
    |||||||||||||||| |||||||||||| |||||||| |||   |||||||||||||||  ||||||||    
T  6269425 tatgagagagaaagttgtcacaaaaattgttataaaatggttgtacaaatatcatttatcaataatttaa 6269356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 44496790 - 44496871
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattg-tataaaatagttagtcaaatatcattt 90  Q
    |||||| |||| || | ||| ||| |||||||||||||||| |||||||||||| || ||||||||||  ||||||||||||    
T  44496790 agagaaaataataatataatgtgagtatgagagagaaagttgtcacaaaaattgttagaaaatagttatacaaatatcattt 44496871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 47448902 - 47448829
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||| ||| |||||||||||||||| |||||||| |||| | ||||| |||  |||||||||||||    
T  47448902 taaaaacacaatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcattt 47448829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 30941461 - 30941389
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  30941461 taaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 30941389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Complemental strand, 42552975 - 42552923
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaa 70  Q
    |||||||| ||| |||||||||||| ||||||| | |||||||||||||||||    
T  42552975 taaaaacataatatgaatatgagagggaaagttgttacaaaaattgtataaaa 42552923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 24614329 - 24614384
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||| ||||| |||||||||||||| || |||||||||  |||||||||||||    
T  24614329 tatgagaaagaaaattatcacaaaaattataaaaaatagttgttcaaatatcattt 24614384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 44895581 - 44895640
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||| |||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  44895581 tgaatatgagatagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 44895640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 49069333 - 49069279
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||| ||||||||| ||| | ||||||||||||||| ||||||||||| ||||    
T  49069333 agagaaaataaaaacataatgtaaatatgagagagaaaattatcacaaaagttgt 49069279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 26 - 90
Target Start/End: Complemental strand, 37352178 - 37352113
Alignment:
Q  26 caatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||||||||| ||| |||||||||||||||| | ||||| |||  |||||||||||||    
T  37352178 caatgtgaatatgagagaaaaaattatcacaaaaattgtcaaaaaatggttgttcaaatatcattt 37352113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 90
Target Start/End: Complemental strand, 2300167 - 2300082
Alignment:
Q  10 agagaagataaaaacacaatttga----atatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||||||||||| |||     ||||||| |||||||| | ||||||||||| |||||||||||  |||||||||||||    
T  2300167 agagaaaataaaaacacaatatgagtatgtatgagatagaaagttgtaacaaaaattgtcataaaatagttgttcaaatatcattt 2300082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 9792825 - 9792769
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaa-tagttagtcaaatatcattt 90  Q
    ||||||||||||||||||||||||| |||| ||||| | |||  |||||||||||||    
T  9792825 tatgagagagaaagttatcacaaaagttgtttaaaagtggttgttcaaatatcattt 9792769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 35212950 - 35212997
Alignment:
Q  17 ataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgta 65  Q
    ||||||||| ||| |||||||||||||||||||| | ||||||||||||    
T  35212950 ataaaaacataatgtgaatatgagagagaaagttgt-acaaaaattgta 35212997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 42598220 - 42598276
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattg-tataaaatagttagtcaaatatcattt 90  Q
    ||||||||| ||||||||||||||||||| || |||||||||   ||||||||||||    
T  42598220 tatgagagataaagttatcacaaaaattgttaaaaaatagttgtacaaatatcattt 42598276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 43482575 - 43482527
Alignment:
Q  43 agaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||||||||| ||||||| | || |||||||||||||    
T  43482575 agaaagttatcacaaaaattgtcataaaatggatattcaaatatcattt 43482527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 44539824 - 44539727
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaatttaa 103  Q
    |||| |||||| ||||||| | ||| | | |||||||||||||||||||||||||||| || ||||| |||  ||||||||||||| ||| ||||||||    
T  44539824 aatagagagaaaataaaaagataatataagtatgagagagaaagttatcacaaaaattataaaaaatggttgttcaaatatcatttctct-taatttaa 44539727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 56557822 - 56557736
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||| |||||||||||| ||| ||||||||||||| || |||||||| |||| ||||||| |||  |||||||||||||    
T  56557822 aatagagagaaggtaaaaacacaatgtgagtatgagagagaaaattgtcacaaaagttgtcataaaattgttgttcaaatatcattt 56557736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 10250511 - 10250583
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| |||||||||  |||||||||||||    
T  10250511 taaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatagttgttcaaatatcattt 10250583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 27051074 - 27051154
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||| |||||| | ||| ||| |||||||||||||||||||||||||||| || ||||| |||  | |||||||||||    
T  27051074 agagaaggtaaaaagataatgtgagtatgagagagaaagttatcacaaaaattataaaaaatggttgtttaaatatcattt 27051154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 43175059 - 43174987
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||||||||||||||||||| ||||| ||||| |||  |||||||||||||    
T  43175059 taaaaaaataatgtgagtatgagagagaaagttatcacaaaagttgtaaaaaatggttgttcaaatatcattt 43174987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 90
Target Start/End: Original strand, 336804 - 336875
Alignment:
Q  19 aaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||| ||||| |||||||||||||||||||| |||||||||||||  |||||| ||   ||||||||||||    
T  336804 aaaaatacaatgtgaatatgagagagaaagttgtcacaaaaattgtcaaaaataattgtacaaatatcattt 336875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40590693 - 40590635
Alignment:
Q  1 aaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 59  Q
    |||||||| ||| |||||||||||| ||| ||||||||||| |||||||| ||||||||    
T  40590693 aaataatagagaaaagataaaaacataatatgaatatgagacagaaagttgtcacaaaa 40590635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 27 - 101
Target Start/End: Complemental strand, 45083047 - 45082973
Alignment:
Q  27 aatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaattt 101  Q
    ||||||| ||||||||||||| ||||||||||| ||||  ||||| |||  ||||||||||||| ||| ||||||    
T  45083047 aatttgagtatgagagagaaaattatcacaaaagttgtcaaaaatggttgttcaaatatcatttctctataattt 45082973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 64
Target Start/End: Original strand, 2738276 - 2738309
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgt 64  Q
    ||||||||||||||||||||||||||||||||||    
T  2738276 tgaatatgagagagaaagttatcacaaaaattgt 2738309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 39478510 - 39478438
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| |||||||| ||||| |||||||||  ||| |||||||||    
T  39478510 taaaaaaataatatgagtatgagagagaaagttgtcacaaaagttgtaaaaaatagttgttcatatatcattt 39478438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 45761240 - 45761292
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaa 70  Q
    |||||| | ||| |||||||||||||||||||| |||||||| ||||||||||    
T  45761240 taaaaatataatatgaatatgagagagaaagttgtcacaaaatttgtataaaa 45761292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 37060406 - 37060347
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||| ||||||| |||||| | ||| |||||||||||||||||||| |||||||| ||||    
T  37060406 aatagagagaaggtaaaaatataatgtgaatatgagagagaaagttgtcacaaaagttgt 37060347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 38134411 - 38134356
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||| |||||||| |||||||||||||| ||||| |||  |||||||||||||    
T  38134411 tatgagaaagaaagttgtcacaaaaattgtaaaaaatggttgttcaaatatcattt 38134356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 50
Target Start/End: Original strand, 5466481 - 5466523
Alignment:
Q  8 atagagaagataaaaacacaatttgaatatgagagagaaagtt 50  Q
    |||||||| ||||||||| ||| ||||||||||||||||||||    
T  5466481 atagagaaaataaaaacataatgtgaatatgagagagaaagtt 5466523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 6239472 - 6239414
Alignment:
Q  1 aaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 59  Q
    |||||||| |||||| |||||||||  || |||||||||||||||||||| ||| ||||    
T  6239472 aaataatagagagaaaataaaaacatgatgtgaatatgagagagaaagttgtcaaaaaa 6239414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 11546896 - 11546938
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaa 60  Q
    |||||| | ||| ||||||||||||||||||||||||||||||    
T  11546896 taaaaatataatatgaatatgagagagaaagttatcacaaaaa 11546938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 100
Target Start/End: Complemental strand, 26910277 - 26910196
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaatt 100  Q
    |||||| | ||| |||||| ||||||||||||| |||||||| ||||| ||||| |||  ||||||||||||| ||| |||||    
T  26910277 taaaaaaataatatgaatacgagagagaaagttgtcacaaaagttgtaaaaaatggtt-ttcaaatatcatttctctataatt 26910196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 32696255 - 32696218
Alignment:
Q  20 aaaacacaatttgaatatgagagagaaagttatcacaa 57  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  32696255 aaaaaacaatgtgaatatgagagagaaagttatcacaa 32696218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 50050698 - 50050641
Alignment:
Q  33 aatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||||||| || |||||||||||||  |||||| ||  |||||||||||||    
T  50050698 aatatgagagagaaaattgtcacaaaaattgtcaaaaataattgttcaaatatcattt 50050641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 5622533 - 5622461
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||| |||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  5622533 taaaaagataatgtgagtatgaaagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 5622461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 18518439 - 18518479
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagtt 50  Q
    |||||| ||||||| ||||| ||||||||||||||||||||    
T  18518439 agagaaaataaaaatacaatgtgaatatgagagagaaagtt 18518479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 23369348 - 23369400
Alignment:
Q  38 gagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  23369348 gagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 23369400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 26492097 - 26492037
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgta 65  Q
    |||| |||||||||||||| | ||| ||||||||||||| ||||||  ||||||| |||||    
T  26492097 aatagagagaagataaaaagataatctgaatatgagagataaagttgccacaaaagttgta 26492037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 37297124 - 37297052
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||||||| || |||||||| ||||| ||||| |||  |||||||||||||    
T  37297124 taaaaagataatgtgagtatgagagagaaaattgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 37297052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 38519852 - 38519796
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| ||||||||||||| | ||||| |||  |||||||||||||    
T  38519852 tatgagagagaaagttgtcacaaaaattgtcaaaaaatggttgttcaaatatcattt 38519796  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 46213025 - 46212973
Alignment:
Q  38 gagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| |||||| ||||||||||| || |||||||||  |||||||||||||    
T  46213025 gagagaaaaagttgtcacaaaaattataaaaaatagttgttcaaatatcattt 46212973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 90
Target Start/End: Original strand, 53654758 - 53654818
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    ||||||||| |||||||||| ||||||||||| | ||||||||| |  |||||||||||||    
T  53654758 tgaatatgaaagagaaagttgtcacaaaaattatcataaaatagatgttcaaatatcattt 53654818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 35 - 96
Target Start/End: Original strand, 76632 - 76693
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctct 96  Q
    |||||||||||||||| ||||||||||| || |||||||||  ||||||||||||| |||||    
T  76632 tatgagagagaaagttgtcacaaaaattataaaaaatagttgttcaaatatcatttctctct 76693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 37139901 - 37139996
Alignment:
Q  1 aaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcatttatctc 95  Q
    |||||||| |||| | ||||||||||||| ||||||||||||||||| || ||| || |||| | |||||||||||  ||||||| ||||| ||||    
T  37139901 aaataatagagagtaaataaaaacacaatgtgaatatgagagagaaaattgtcataagaattatcataaaatagttgttcaaataacatttctctc 37139996  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 37685419 - 37685334
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||  |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  37685419 aatagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 37685334  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 90
Target Start/End: Original strand, 37700099 - 37700184
Alignment:
Q  5 aatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||| ||||||  |||||| | ||| ||| |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  37700099 aatagagagaaagtaaaaagataatgtgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 37700184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 1689450 - 1689394
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattg-tataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||||||| ||||||||||||   ||||||||||||    
T  1689450 tatgagagagaaagttgtcacaaaaattgttataaaatagttgtacaaatatcattt 1689394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 12657297 - 12657225
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||||||||||||||||| ||||||||||| |||||  ||  |||||||||||||    
T  12657297 taaaaagataatgtgagtatgagagagaaagttatctcaaaaattgtaaaaaatgattgttcaaatatcattt 12657225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 30735289 - 30735365
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatct 94  Q
    |||||| | ||| ||| ||||||||| |||||| |||||||| ||||| ||||| |||  |||||||||||||||||    
T  30735289 taaaaaaataatgtgagtatgagagaaaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttatct 30735365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 40861256 - 40861328
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||||||||||||| ||| |||||||||||||| || ||| |||||  |||||||||||||    
T  40861256 taaaaagataatgtgaatatgagagataaaattatcacaaaaattataaaaagtagttgttcaaatatcattt 40861328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 8350209 - 8350264
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  8350209 tatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 8350264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 64
Target Start/End: Original strand, 50775152 - 50775198
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  50775152 taaaaacataatgtgagtatgagagagaaagttgtcacaaaaattgt 50775198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 9566956 - 9567029
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| ||| |||||||||||||||| |||||||| |||| | ||||| |||  |||||||||||||    
T  9566956 taaaaacataatgtgagtatgagagagaaagttgtcacaaaagttgtcaaaaaatggttgttcaaatatcattt 9567029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 38713633 - 38713600
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgt 64  Q
    |||||||||||||||||||| |||||||||||||    
T  38713633 tgaatatgagagagaaagttgtcacaaaaattgt 38713600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 3558936 - 3558876
Alignment:
Q  4 taatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    ||||| ||||||  |||||||| ||| ||| |||||||||||||||||||| |||| ||||    
T  3558936 taatagagagaaagtaaaaacataatgtgagtatgagagagaaagttatcataaaagttgt 3558876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 64
Target Start/End: Complemental strand, 30536081 - 30536021
Alignment:
Q  4 taatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgt 64  Q
    ||||| ||||||  |||||| | ||| ||| |||||||||||||||| |||||||||||||    
T  30536081 taatagagagaaagtaaaaatataatgtgagtatgagagagaaagttgtcacaaaaattgt 30536021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 32915084 - 32915140
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||| |||| ||||||||| |  |||||||||||||    
T  32915084 tatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcattt 32915140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 33100883 - 33100811
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| ||| |||| ||||| ||||| |||  |||||||||||||    
T  33100883 taaaaagataatgtgagtatgagagagaaagttgtcaaaaaagttgtaaaaaatggttgttcaaatatcattt 33100811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 35369775 - 35369703
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| ||||| ||| ||||||| |||||||| |||||||| ||||| |||||  ||  |||||||||||||    
T  35369775 taaaaagacaatgtgagtatgagatagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcattt 35369703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 37275029 - 37275101
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| ||||| ||||||||||||||||||| || || ||||| |||  |||||||||||||    
T  37275029 taaaaagataatgtgagtatgaaagagaaagttatcacaaaagttataaaaaatggttgttcaaatatcattt 37275101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 47214267 - 47214211
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||| |||| ||||||||| |  |||||||||||||    
T  47214267 tatgagagagaaagttgtcacaaaagttgtcataaaatagatgttcaaatatcattt 47214211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6511838 - 6511896
Alignment:
Q  1 aaataatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaa 59  Q
    |||||||| |||||| ||||||||| ||| | | |||||||||||||||||||||||||    
T  6511838 aaataatagagagaaaataaaaacataatataagtatgagagagaaagttatcacaaaa 6511896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 34810650 - 34810719
Alignment:
Q  31 tgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcatttatctctaatt 100  Q
    ||||||||||||| ||||||||||||| | ||||| ||||| |||  ||||||||||||| ||| |||||    
T  34810650 tgaatatgagagataaagttatcacaagagttgtaaaaaatggttgttcaaatatcatttctctttaatt 34810719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 28772136 - 28772192
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgt-ataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||||||||||||||||| | ||||| |||  |||||||||||||    
T  28772136 tatgagagagaaagttatcacaaaaattgtcaaaaaatggttgttcaaatatcattt 28772192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 27325816 - 27325761
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||||||||||| |||||||| ||||| ||||| |||  |||||||||||||    
T  27325816 tatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 27325761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 4 - 90
Target Start/End: Original strand, 33100450 - 33100537
Alignment:
Q  4 taatatagagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattg-tataaaatagttagtcaaatatcattt 90  Q
    ||||| |||||| |||||||   ||| ||| |||||||||||||||| |||||||| ||| |||||||| |||  |||||||||||||    
T  33100450 taatagagagaaaataaaaatgtaatgtgagtatgagagagaaagttgtcacaaaagttgttataaaatggttgttcaaatatcattt 33100537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 90
Target Start/End: Original strand, 38578377 - 38578432
Alignment:
Q  35 tatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||| ||| ||||||||||||||||||||| |||||| ||  |||||||||||||    
T  38578377 tatgaaagataaagttatcacaaaaattgtaaaaaataattgttcaaatatcattt 38578432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 63
Target Start/End: Complemental strand, 34639616 - 34639563
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattg 63  Q
    |||||| ||||| ||| ||| ||||||||||||||||| ||| |||||||||||    
T  34639616 agagaaaataaacacataatgtgaatatgagagagaaaattagcacaaaaattg 34639563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 36786849 - 36786796
Alignment:
Q  17 ataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaa 70  Q
    ||||||||| ||||||| ||| |||||||||||| |||||||| ||||| ||||    
T  36786849 ataaaaacataatttgagtataagagagaaagttgtcacaaaagttgtaaaaaa 36786796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 4054282 - 4054354
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||||||||| ||| |||||||||||| || ||||| ||||| |||  |||||||||||||    
T  4054282 taaaaagataatgtgaatatgaaagataaagttatcacagaagttgtaaaaaatggttgttcaaatatcattt 4054354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 10902780 - 10902708
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||||| ||| ||| | |||||||||||||| | ||||||||| |  ||||| |||| |||||||||||||    
T  10902780 taaaaacataatgtgagtgtgagagagaaagttgttacaaaaattatcaaaaatggttattcaaatatcattt 10902708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 50
Target Start/End: Original strand, 11114657 - 11114697
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagtt 50  Q
    |||||| ||||||||| ||| ||||||||||||||||||||    
T  11114657 agagaaaataaaaacataatgtgaatatgagagagaaagtt 11114697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 34186690 - 34186622
Alignment:
Q  10 agagaagataaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagt 78  Q
    |||||| ||||||| | ||| ||| ||| | |||||||||| |||||||| ||||| ||||||||||||    
T  34186690 agagaaaataaaaagataatgtgagtataaaagagaaagttgtcacaaaagttgtaaaaaatagttagt 34186622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 43397856 - 43397784
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||||||||||||| | |||||| ||||| ||||| |||  |||||||||||||    
T  43397856 taaaaaaataatgtgagtatgagagagaaagttgtaacaaaagttgtaaaaaatggttgttcaaatatcattt 43397784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 10959 - 11031
Alignment:
Q  18 taaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    |||||| | ||| ||| |||||| |||||| |||||| ||||||| || |||||||||| |||||||||||||    
T  10959 taaaaagataatgtgagtatgagggagaaaattatcaaaaaaattataaaaaatagttattcaaatatcattt 11031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 366368 - 366297
Alignment:
Q  19 aaaaacacaatttgaatatgagagagaaagttatcacaaaaattgtataaaatagttagtcaaatatcattt 90  Q
    ||||||| ||| |||||||||||||||||||| |||||||| ||||  ||||| |||   ||||||||||||    
T  366368 aaaaacataatgtgaatatgagagagaaagttgtcacaaaagttgttaaaaatggttgtacaaatatcattt 366297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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