View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_29 (Length: 454)

Name: NF6698_low_29
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_29
NF6698_low_29
[»] chr8 (2 HSPs)
chr8 (1-435)||(9831306-9831750)
chr8 (1-61)||(15907043-15907103)
[»] chr1 (4 HSPs)
chr1 (9-103)||(37200484-37200578)
chr1 (4-68)||(38544396-38544460)
chr1 (10-123)||(11439646-11439758)
chr1 (10-67)||(41126132-41126189)
[»] chr2 (6 HSPs)
chr2 (4-77)||(4472280-4472353)
chr2 (1-61)||(22884801-22884861)
chr2 (11-60)||(41113428-41113477)
chr2 (1-67)||(27740322-27740388)
chr2 (10-69)||(16952023-16952082)
chr2 (10-69)||(17022688-17022747)
[»] chr4 (2 HSPs)
chr4 (10-70)||(46487623-46487683)
chr4 (4-56)||(49747865-49747917)
[»] chr7 (4 HSPs)
chr7 (1-90)||(9427736-9427825)
chr7 (10-90)||(23983587-23983667)
chr7 (4-69)||(2331762-2331826)
chr7 (4-69)||(2339295-2339359)
[»] chr5 (4 HSPs)
chr5 (181-228)||(26398632-26398679)
chr5 (1-123)||(23426634-23426755)
chr5 (10-59)||(30097676-30097725)
chr5 (12-60)||(7682898-7682946)
[»] scaffold1613 (1 HSPs)
scaffold1613 (4-68)||(675-739)
[»] chr6 (1 HSPs)
chr6 (10-70)||(17278140-17278200)
[»] chr3 (1 HSPs)
chr3 (195-228)||(13420796-13420829)


Alignment Details
Target: chr8 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 435
Target Start/End: Complemental strand, 9831750 - 9831306
Alignment:
Q  1 ttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctctt-----aatcaccgacctctgctccttttgagcacaaat 95  Q
    ||||||||||||||||||||| || || | |||||||||| ||||||||||||||||||||      ||||||||||||||  || ||||||||| | ||    
T  9831750 ttgtatggagtttattttcgggtggtcggcctatatacgacgtctttagtttgtattctctgctctgaatcaccgacctctattcgttttgagcaaagat 9831651  T
Q  96 ctgattttctgaataaaatttgttgtttcnnnnnnn------tgtagtcgttggtcaatgatttagcaagtatactaaatgtgtggtcaactaataatat 189  Q
    |||||||||| ||||||||||||| ||||             || |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9831650 ctgattttctaaataaaatttgttatttcaaaaaaaaaaaaatgcagtcattggtcaatgatttaacaagtatactaaatgtgtggtcaactaataatat 9831551  T
Q  190 tcataataagttcgtctctatatggattgtgaaatttcttacttacgatattgatatcgcgtttaattaattagaataaagtaacat-gaagtatgcact 288  Q
    |||||||||||||||||||||||||||||||||||| || |||||||||||      |||||||||||||||||||| ||||| ||| ||||||||||||    
T  9831550 tcataataagttcgtctctatatggattgtgaaattcct-acttacgatat------cgcgtttaattaattagaatcaagtatcattgaagtatgcact 9831458  T
Q  289 atgcaatatggttaagttgacacaaataaagagagaagtgattgattagatcatgtttgattcccctctctctcaatgctccatagtaactaggtctatt 388  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9831457 atgcaatatggttaagttgacacaaatgaagagagaagtgattgattagatcatgtttgattcccctctctctcaatgctcgatagtaactaggtctatt 9831358  T
Q  389 tcctacgatcctctaa-----tttgttttcaaggtatttaaacatagtagct 435  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||    
T  9831357 tcctacgatcctctaatttgatttgttttcaaggtatttaaacatagtagct 9831306  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 15907043 - 15907103
Alignment:
Q  1 ttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctct 61  Q
    |||| ||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||    
T  15907043 ttgtttggagtttattgtcggatgctccgcctatatacgatgcctttagtttgtattctct 15907103  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 103
Target Start/End: Original strand, 37200484 - 37200578
Alignment:
Q  9 agtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagcacaaatctgatttt 103  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||   |||||||  ||||| || | ||||||| |||| |||||||    
T  37200484 agtttattttcggatgttccgcctatatacgatgtctttagtttgtattctcggtatcaccggtctctgttcgtcttgagcaaaaatttgatttt 37200578  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 38544460 - 38544396
Alignment:
Q  4 tatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcac 68  Q
    ||||| |||||||||||| || |||   ||||||||| |||||||||||||||||||| ||||||    
T  38544460 tatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcac 38544396  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 123
Target Start/End: Complemental strand, 11439758 - 11439646
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagcacaaatctgattttctgaat 109  Q
    ||||||||||||||| |||||||||||| |  | |||| |||||||||||| |  ||||||| || || || | ||||||| | ||||| || | | |||    
T  11439758 gtttattttcggatgttccgtctatatatgtcgccttttgtttgtattctcattttcaccgatctttgttcgtcttgagcagagatctggttgt-ttaat 11439660  T
Q  110 aaaatttgttgttt 123  Q
    ||||||||||||||    
T  11439659 aaaatttgttgttt 11439646  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 41126189 - 41126132
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatca 67  Q
    |||||||||||| || ||   |||||||||||| |||||||||||||||||| |||||    
T  41126189 gtttattttcgggtgttctacctatatacgatgcctttagtttgtattctctgaatca 41126132  T

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Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 4 - 77
Target Start/End: Original strand, 4472280 - 4472353
Alignment:
Q  4 tatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctg 77  Q
    ||||| ||||||||||||||| ||||||||||||||| | |||||||||||||||||| | ||||||| |||||    
T  4472280 tatggtgtttattttcggatgttccgtctatatacgacgcctttagtttgtattctctgattcaccgaactctg 4472353  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 22884861 - 22884801
Alignment:
Q  1 ttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctct 61  Q
    ||||||||||||||||||||| || |||| |||||||||| | ||||||||||||||||||    
T  22884861 ttgtatggagtttattttcgggtgttccgcctatatacgacgcctttagtttgtattctct 22884801  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 60
Target Start/End: Complemental strand, 41113477 - 41113428
Alignment:
Q  11 tttattttcggatgatccgtctatatacgatgtctttagtttgtattctc 60  Q
    |||||||||||||| |||| |||||||| |||||||||||||||||||||    
T  41113477 tttattttcggatgttccgcctatatacaatgtctttagtttgtattctc 41113428  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27740322 - 27740388
Alignment:
Q  1 ttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatca 67  Q
    ||||||||||||||||||||| || |||  |||||||||| | |||||||||||||| ||| |||||    
T  27740322 ttgtatggagtttattttcgggtgttccacctatatacgacgcctttagtttgtattatctgaatca 27740388  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 16952082 - 16952023
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 69  Q
    ||||||||| ||||| || | |||||||||| |||| ||||||||||||||| |||||||    
T  16952082 gtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacc 16952023  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 69
Target Start/End: Complemental strand, 17022747 - 17022688
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 69  Q
    ||||||||| ||||| || | |||||||||| |||| ||||||||||||||| |||||||    
T  17022747 gtttatttttggatgttctgcctatatacgacgtctatagtttgtattctctaaatcacc 17022688  T

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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 46487623 - 46487683
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccg 70  Q
    ||||||||||||||| |||| |||||||||||| |||||||||||||||||| ||||||||    
T  46487623 gtttattttcggatgttccgcctatatacgatgcctttagtttgtattctctaaatcaccg 46487683  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 49747865 - 49747917
Alignment:
Q  4 tatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtat 56  Q
    ||||| ||||||||| ||||| ||||  |||||||||||||||| ||||||||    
T  49747865 tatggtgtttatttttggatgttccgcatatatacgatgtcttttgtttgtat 49747917  T

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Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 9427825 - 9427736
Alignment:
Q  1 ttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagca 90  Q
    |||||||||||||||||| ||||  |||| ||||||||| ||  ||||||||||||||||| ||||||||| ||||| || | |||||||    
T  9427825 ttgtatggagtttatttttggatattccgcctatatacgttgcatttagtttgtattctctaaatcaccgatctctgttcgtcttgagca 9427736  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 23983587 - 23983667
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagca 90  Q
    ||||||||| ||||| |||| |||||||||||| ||||| |||||||||||| ||||||||| || || || |||||||||    
T  23983587 gtttatttttggatgctccgcctatatacgatgcctttaatttgtattctctgaatcaccgatctttgttcgttttgagca 23983667  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 2331826 - 2331762
Alignment:
Q  4 tatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 69  Q
    ||||| ||||||||| ||||| |||||||||||||| | |||| ||||||||  ||||||||||||    
T  2331826 tatggtgtttatttt-ggatgttccgtctatatacggtatcttgagtttgtagcctcttaatcacc 2331762  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 4 - 69
Target Start/End: Complemental strand, 2339359 - 2339295
Alignment:
Q  4 tatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcacc 69  Q
    ||||| ||||||||| ||||| ||||||||||||||  ||||| ||||||||  ||||||||||||    
T  2339359 tatggtgtttatttt-ggatgttccgtctatatacggcgtcttgagtttgtagcctcttaatcacc 2339295  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 26398679 - 26398632
Alignment:
Q  181 taataatattcataataagttcgtctctatatggattgtgaaatttct 228  Q
    |||||||||| |||||||||| |||| |||||||||||||||||||||    
T  26398679 taataatatttataataagtttgtctttatatggattgtgaaatttct 26398632  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 23426634 - 23426755
Alignment:
Q  1 ttgtatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccgacctctgctccttttgagcacaaatctgat 100  Q
    |||| |||||| ||||||||| || |||| |||||||||    ||||   ||||||||||| ||||||||  ||||| |||| |||||||  ||||||||    
T  23426634 ttgtttggagtgtattttcgggtgttccgcctatatacggcaccttttagttgtattctctgaatcaccggtctctgttcctcttgagcagcaatctgat 23426733  T
Q  101 tttctgaataaaatttgttgttt 123  Q
    ||| | ||||||||||| |||||    
T  23426734 ttt-taaataaaatttgctgttt 23426755  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 59
Target Start/End: Original strand, 30097676 - 30097725
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattct 59  Q
    |||||||||||| || |||| |||||||||  ||||||||||||||||||    
T  30097676 gtttattttcgggtgttccgcctatatacggcgtctttagtttgtattct 30097725  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 7682898 - 7682946
Alignment:
Q  12 ttattttcggatgatccgtctatatacgatgtctttagtttgtattctc 60  Q
    ||||||||||||| |||| |||||||||| | ||||| |||||||||||    
T  7682898 ttattttcggatgttccgcctatatacgacgcctttaatttgtattctc 7682946  T

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Target: scaffold1613 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 68
Target Start/End: Complemental strand, 739 - 675
Alignment:
Q  4 tatggagtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcac 68  Q
    ||||| |||||||||||| || |||   ||||||||| |||||||||||||||||||| ||||||    
T  739 tatggtgtttattttcgggtgttccacatatatacgacgtctttagtttgtattctctgaatcac 675  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 10 - 70
Target Start/End: Complemental strand, 17278200 - 17278140
Alignment:
Q  10 gtttattttcggatgatccgtctatatacgatgtctttagtttgtattctcttaatcaccg 70  Q
    |||||||||||| || |||| |||||||||| | |||||| ||||||||||| ||||||||    
T  17278200 gtttattttcgggtgttccgcctatatacgacgcctttagattgtattctctgaatcaccg 17278140  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 13420829 - 13420796
Alignment:
Q  195 ataagttcgtctctatatggattgtgaaatttct 228  Q
    |||||||| |||||||||||||||||||||||||    
T  13420829 ataagttcttctctatatggattgtgaaatttct 13420796  T

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