View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_33 (Length: 426)

Name: NF6698_low_33
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_33
NF6698_low_33
[»] chr1 (1 HSPs)
chr1 (32-128)||(3929116-3929211)
[»] chr4 (2 HSPs)
chr4 (17-124)||(6354666-6354772)
chr4 (42-126)||(23531119-23531202)
[»] chr2 (2 HSPs)
chr2 (19-98)||(44911970-44912049)
chr2 (90-128)||(23244852-23244890)
[»] chr5 (1 HSPs)
chr5 (90-128)||(6437366-6437404)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 32 - 128
Target Start/End: Original strand, 3929116 - 3929211
Alignment:
Q  32 tgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctcatt 128  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  3929116 tgaaagggtgaaaagattacgctgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgatcctctcatcctctcatt 3929211  T

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Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 6354666 - 6354772
Alignment:
Q  17 cacaaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctct 116  Q
    ||||||||||||||  ||||||||||||| ||||   ||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  6354666 cacaaagggatgaaacgaaaggctgaaaatattacaatgtggttataaaagttagagatcatagtaaaga-ttgatccaatggtcaccatttgattctct 6354764  T
Q  117 catcctct 124  Q
    ||||||||    
T  6354765 catcctct 6354772  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 23531202 - 23531119
Alignment:
Q  42 aaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatggtcaccatttgatcctctcatcctctca 126  Q
    ||||||||| ||||  ||||| ||| ||| | ||||| ||||| |||| ||||||||||||  |||||||||||||| |||||||    
T  23531202 aaaagattaagctgcagttattaaaattaaacatcatggtaaagattt-atccaatggtcaggatttgatcctctcaccctctca 23531119  T

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Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 44911970 - 44912049
Alignment:
Q  19 caaagggatgaattgaaaggctgaaaagattatgctgtggttataaaagttagagatcatagtaaatatttgatccaatg 98  Q
    ||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  44911970 caaagggatgaaacgaaaggctgaaaagattacgctgtggttataaaagttagagatcatagtaaagatttgatccaatg 44912049  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Complemental strand, 23244890 - 23244852
Alignment:
Q  90 gatccaatggtcaccatttgatcctctcatcctctcatt 128  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  23244890 gatccaatggtcaccatttgatcatctcaccctctcatt 23244852  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 128
Target Start/End: Original strand, 6437366 - 6437404
Alignment:
Q  90 gatccaatggtcaccatttgatcctctcatcctctcatt 128  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  6437366 gatccaatggtcaccatttgatcatctcaccctctcatt 6437404  T

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