View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_34 (Length: 420)
Name: NF6698_low_34
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 19 - 395
Target Start/End: Complemental strand, 10613664 - 10613288
Alignment:
| Q |
19 |
gatattaggctagaatatcttagtttatctcctaggattaattttcaatcgtaatgtgtcgtagattatctctttgaattaatttccacatttcttattt |
118 |
Q |
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| T |
10613664 |
gatattaggctagaatatcttagtttatctcctaggattagttttcaatcgtaatgtgtcgtagattatctctttgaattaatttccacatttcttattt |
10613565 |
T |
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| Q |
119 |
attactgttatttgttcatatatttccctatttatttaggattgggtctacgtttccctataataggattagtatcaagtaattatcagtaatattcaaa |
218 |
Q |
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| T |
10613564 |
attactgttatttgttcatatatttccctatttatttaggattgggtctacgtttccctataataggattagtatcaagtaattatcagtaatattcaaa |
10613465 |
T |
|
| Q |
219 |
gtttttattattatcattctctccatcttttatctaaaaagccacagctttaacattaggtgtctagagttttggttcgaccctctgacatatctattct |
318 |
Q |
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| T |
10613464 |
gtttttattattattattctctccatcttttatctaaaaagccacagctttaacattaggtgtctagagttttggttcgaccctctgacatatctattat |
10613365 |
T |
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| Q |
319 |
gttgactagtttccaaaagttggagaatgtaataacaattgtattcaaatgttttcctcttttccagtgtgatctcc |
395 |
Q |
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| T |
10613364 |
gttgactagtttcaaaaagtttgagaatgtaataacaattgtattcaaatggtttcctcttttccagtgtgatctcc |
10613288 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 10723856 - 10723815
Alignment:
| Q |
189 |
agtatcaagtaattatcagtaatattcaaagtttttattatt |
230 |
Q |
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| T |
10723856 |
agtatcaagttattatcaataatattcaaagttcttattatt |
10723815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 22177837 - 22177788
Alignment:
| Q |
19 |
gatattaggctagaatatcttagtttatctcctaggattaattttcaatc |
68 |
Q |
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||||||| |||||||||||| |||||||||| | ||||||||||||||| |
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| T |
22177837 |
gatattattctagaatatcttggtttatctccgatgattaattttcaatc |
22177788 |
T |
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