View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6698_low_36 (Length: 410)

Name: NF6698_low_36
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6698_low_36
NF6698_low_36
[»] chr5 (10 HSPs)
chr5 (7-403)||(26708138-26708533)
chr5 (7-403)||(26977872-26978267)
chr5 (141-208)||(25860202-25860269)
chr5 (18-118)||(37193189-37193290)
chr5 (149-209)||(7032935-7032995)
chr5 (141-209)||(29069500-29069568)
chr5 (299-373)||(29272430-29272503)
chr5 (142-224)||(41249479-41249561)
chr5 (22-68)||(41249606-41249652)
chr5 (18-125)||(29069405-29069513)
[»] chr4 (7 HSPs)
chr4 (225-380)||(27065877-27066034)
chr4 (225-380)||(27086980-27087137)
chr4 (273-379)||(6662009-6662115)
chr4 (278-403)||(43290307-43290434)
chr4 (141-224)||(22433593-22433676)
chr4 (19-68)||(22433722-22433771)
chr4 (151-209)||(9591545-9591603)
[»] chr3 (15 HSPs)
chr3 (292-403)||(53834976-53835089)
chr3 (140-224)||(22604482-22604566)
chr3 (267-370)||(7138632-7138736)
chr3 (141-209)||(50093661-50093729)
chr3 (282-408)||(14656358-14656485)
chr3 (141-209)||(54378403-54378471)
chr3 (141-227)||(11559861-11559947)
chr3 (141-227)||(11569130-11569216)
chr3 (18-125)||(11559767-11559874)
chr3 (18-125)||(11569036-11569143)
chr3 (141-181)||(54783835-54783875)
chr3 (143-217)||(25745760-25745834)
chr3 (22-118)||(50093570-50093667)
chr3 (18-98)||(54378312-54378393)
chr3 (18-57)||(22604419-22604458)
[»] chr8 (9 HSPs)
chr8 (141-232)||(15075267-15075358)
chr8 (154-226)||(2751466-2751538)
chr8 (140-224)||(4975618-4975702)
chr8 (141-209)||(20990947-20991015)
chr8 (150-205)||(25380549-25380604)
chr8 (150-226)||(13322365-13322441)
chr8 (18-57)||(4975367-4975406)
chr8 (19-57)||(2751586-2751624)
chr8 (30-110)||(20990862-20990943)
[»] chr2 (9 HSPs)
chr2 (302-380)||(10945597-10945675)
chr2 (302-374)||(10939734-10939806)
chr2 (140-224)||(30870129-30870213)
chr2 (141-228)||(34214489-34214576)
chr2 (141-204)||(8907826-8907889)
chr2 (141-224)||(29454489-29454572)
chr2 (142-184)||(17354200-17354242)
chr2 (18-68)||(29454353-29454403)
chr2 (18-57)||(30870244-30870283)
[»] chr1 (12 HSPs)
chr1 (244-395)||(24188377-24188528)
chr1 (302-397)||(49389193-49389288)
chr1 (140-224)||(25878814-25878898)
chr1 (141-208)||(33372305-33372372)
chr1 (18-68)||(10917799-10917849)
chr1 (151-209)||(28007599-28007657)
chr1 (18-110)||(28007492-28007585)
chr1 (142-212)||(30936713-30936779)
chr1 (141-184)||(10917711-10917754)
chr1 (18-57)||(25878744-25878783)
chr1 (143-221)||(32990700-32990778)
chr1 (22-68)||(33372417-33372462)
[»] chr6 (4 HSPs)
chr6 (302-374)||(24043263-24043335)
chr6 (299-403)||(18812521-18812624)
chr6 (142-221)||(292450-292527)
chr6 (15-43)||(292382-292410)
[»] chr7 (4 HSPs)
chr7 (306-397)||(13817476-13817567)
chr7 (339-403)||(32354091-32354155)
chr7 (145-212)||(42594551-42594618)
chr7 (149-209)||(23429148-23429208)


Alignment Details
Target: chr5 (Bit Score: 273; Significance: 1e-152; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 26708533 - 26708138
Alignment:
Q  7 atatgctctaagatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaagggggtcaaagtagacat 106  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||| |  |||||||||| ||||| |||||||    
T  26708533 atatgctctaagatccttcttagttttgtaattttttgtagtgtaataagtagactatgtgagtacaataatactttataaaggggatcaaactagacat 26708434  T
Q  107 atatttaatttttggttaatccgtcnnnnnnnnttaattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgccccc 206  Q
    |||||||||||||||||||||| |         ||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||| |    
T  26708433 atatttaatttttggttaatcc-taaaaaaaaattaattttagattaaaaatacaatacacaagaggaggcaagtggggtcacttgaccccattgccctc 26708335  T
Q  207 acattgaattcgtgcctgcatgtgtaaacttgatttaagaagctcatgaaggtaaatatgtgatatgcattagtgaaacaagtgtaatagagatgttgtc 306  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  26708334 acattgattccgtgcctgcatgtgtaaacttgatttaagaagctcatgaagctaaatatgtgatatgcattagtaaaacaagtgtaagagagatgttgtc 26708235  T
Q  307 gcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagattcacattaaattatttgtgacat 403  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  26708234 gcttagaaataatctaagtagatctgaatatatttttgtggcacttgttaaactcatgagatacatattgagattcatattaaattatttgtgacat 26708138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 26978267 - 26977872
Alignment:
Q  7 atatgctctaagatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaagggggtcaaagtagacat 106  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||| ||||||| |  |||||||||| ||||| |||||||    
T  26978267 atatgctctaagatccttcttagttttgtaattttttgtagtgtaataagtagactatgtgagtacaataatactttataaaggggatcaaactagacat 26978168  T
Q  107 atatttaatttttggttaatccgtcnnnnnnnnttaattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgccccc 206  Q
    |||||||||||||||||||||| |         ||||||||||||||||||||||||||||||| ||||||||||||| || ||||| |||||||||| |    
T  26978167 atatttaatttttggttaatcc-taaaaaaaaattaattttagattaaaaatacaatacacaagaggaggcaagtggggtcacttgaccccattgccctc 26978069  T
Q  207 acattgaattcgtgcctgcatgtgtaaacttgatttaagaagctcatgaaggtaaatatgtgatatgcattagtgaaacaagtgtaatagagatgttgtc 306  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||    
T  26978068 acattgattccgtgcctgcatgtgtaaacttgatttaagaagctcatgaagctaaatatgtgatatgcattagtaaaacaagtgtaagagagatgttgtc 26977969  T
Q  307 gcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagattcacattaaattatttgtgacat 403  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  26977968 gcttagaaataatctaagtagatctgaatatatttttgtggcacttgttaaactcatgagatacatattgagattcatattaaattatttgtgacat 26977872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 208
Target Start/End: Original strand, 25860202 - 25860269
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccac 208  Q
    |||||||||||||||||||||||||||||||||||| ||||||  ||| |||| ||||||||||||||    
T  25860202 taattttagattaaaaatacaatacacaagtggagggaagtggagtcggttgaccccattgcccccac 25860269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Original strand, 37193189 - 37193290
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatatttaatt 116  Q
    ||||||||||| |||| |||||||||||||||||||||||||||| |||||   ||||||| | |||||||| ||||||||| |||| |||| | |||||    
T  37193189 gatccttcttagttttataattttttgtagtttaataaatagactgtgtgaagacaataatactatataaagaggggtcaaactagatatatttataatt 37193288  T
Q  117 tt 118  Q
    ||    
T  37193289 tt 37193290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 7032935 - 7032995
Alignment:
Q  149 gattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    |||||||||||||||| ||||||||||||||||||| ||| |||| |||||||||||||||    
T  7032935 gattaaaaatacaataaacaagtggaggcaagtggggtcggttgaccccattgcccccaca 7032995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 29069500 - 29069568
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    ||||||| | ||||||||||||||| || ||||||||||||||| |||||||| |||||||||||||||    
T  29069500 taattttgggttaaaaatacaatacccatgtggaggcaagtggggtcgcttgaccccattgcccccaca 29069568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 299 - 373
Target Start/End: Original strand, 29272430 - 29272503
Alignment:
Q  299 atgttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatata 373  Q
    ||||||||||||| || |||| |||| ||||||||||||| |||||||| ||| |||||||||||||||||||||    
T  29272430 atgttgtcgcttaaaattaatttaagcagacctgaatata-ttttgtggtactcgttaaactcatgagatatata 29272503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 142 - 224
Target Start/End: Complemental strand, 41249561 - 41249479
Alignment:
Q  142 aattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    |||||| | |||||||||||||||||| ||||||||||||||| || ||||| ||||||| |||||||||  || ||||||||    
T  41249561 aattttgggttaaaaatacaatacacatgtggaggcaagtggggtcacttgaccccattgtccccacattagatccgtgcctg 41249479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 41249652 - 41249606
Alignment:
Q  22 cttcttaattttgtaattttttgtagtttaataaatagactatgtga 68  Q
    |||||||||||||||||||||| || | |||||||||||||||||||    
T  41249652 cttcttaattttgtaattttttttaatgtaataaatagactatgtga 41249606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 29069405 - 29069513
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatatttaatt 116  Q
    ||||||||||| |||| |||||||||||||| ||||||||| | | |||||   ||||||| | |||||||| | ||||||| || | |||||| |||||    
T  29069405 gatccttcttagttttataattttttgtagtgtaataaataaattgtgtgaagacaataatactatataaagagaggtcaaactaaatatatatctaatt 29069504  T
Q  117 tttggttaa 125  Q
    || ||||||    
T  29069505 ttgggttaa 29069513  T

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Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 380
Target Start/End: Original strand, 27065877 - 27066034
Alignment:
Q  225 catgtgtaaacttgatttaagaagctcatgaaggtaaatatgt--gatatgcattagtgaaacaagtgtaatagagatgttgtcgcttagaaataatcta 322  Q
    |||||| || ||||||||||||| |||||||| |||||||| |  | ||||||| |||||||||||||||||||| |||||||| |||| || |||| ||    
T  27065877 catgtgcaagcttgatttaagaaactcatgaatgtaaatatatatggtatgcatgagtgaaacaagtgtaatagaaatgttgtcacttaaaattaattta 27065976  T
Q  323 agtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagat 380  Q
    ||||||| |||| ||||| ||||| |||||| |||||| |||||||||||||||||||    
T  27065977 agtagacttgaacatattgttgtgtcacttgctaaacttatgagatatatattgagat 27066034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 380
Target Start/End: Original strand, 27086980 - 27087137
Alignment:
Q  225 catgtgtaaacttgatttaagaagctcatgaaggtaaatatgt--gatatgcattagtgaaacaagtgtaatagagatgttgtcgcttagaaataatcta 322  Q
    |||||| || ||||||||||||| |||||||| |||||||| |  | ||||||| |||||||||||||||||||| |||||||| |||| || |||| ||    
T  27086980 catgtgcaagcttgatttaagaaactcatgaatgtaaatatatatggtatgcatgagtgaaacaagtgtaatagaaatgttgtcacttaaaattaattta 27087079  T
Q  323 agtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagat 380  Q
    ||||||| |||| ||||| ||||| |||||| |||||| |||||||||||||||||||    
T  27087080 agtagacttgaacatattgttgtgtcacttgctaaacttatgagatatatattgagat 27087137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 273 - 379
Target Start/End: Complemental strand, 6662115 - 6662009
Alignment:
Q  273 gcattagtgaaacaagtgtaatagagatgttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatat 372  Q
    ||||||||||||||||||||||  ||||||||||| ||||||||||| |||||||||||||||||||| |||  |||||||||||| ||||||| |||||    
T  6662115 gcattagtgaaacaagtgtaattaagatgttgtcgtttagaaataatataagtagacctgaatatattattgctgcacttgttaaattcatgagttatat 6662016  T
Q  373 attgaga 379  Q
    |||||||    
T  6662015 attgaga 6662009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 278 - 403
Target Start/End: Original strand, 43290307 - 43290434
Alignment:
Q  278 agtgaaacaagtgtaatagagatgttgtcgcttagaaataatctaagtagacctgaatatattttt--gtggcacttgttaaactcatgagatatatatt 375  Q
    ||||||| ||| | |||| ||||||||||||||| || |||| ||||  ||| || ||||||||||  |||| ||||| |||||||||||||||||||||    
T  43290307 agtgaaataagggcaatatagatgttgtcgcttaaaagtaatttaagcggacatgtatatatttttttgtggtacttgataaactcatgagatatatatt 43290406  T
Q  376 gagattcacattaaattatttgtgacat 403  Q
    ||||| ||| ||||| |||| |||||||    
T  43290407 gagatacaccttaaaatattggtgacat 43290434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 22433676 - 22433593
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    ||||||| | |||||||||||||| ||| ||||||||||||||| |||||||| |||||||||||||||| | || ||||||||    
T  22433676 taattttgggttaaaaatacaataaacaggtggaggcaagtggggtcgcttgaccccattgcccccacatggtatccgtgcctg 22433593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 22433771 - 22433722
Alignment:
Q  19 atccttcttaattttgtaattttttgtagtttaataaatagactatgtga 68  Q
    |||||||||| ||||||||||||||||||| |||||||||||||| ||||    
T  22433771 atccttcttagttttgtaattttttgtagtgtaataaatagactaggtga 22433722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Complemental strand, 9591603 - 9591545
Alignment:
Q  151 ttaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    ||||||||||||||  |||||||||||||||||| | | |||| |||||||||||||||    
T  9591603 ttaaaaatacaataagcaagtggaggcaagtggggttggttgaccccattgcccccaca 9591545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 53835089 - 53834976
Alignment:
Q  292 aatagagatgttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatat--attgagattcacattaa 389  Q
    ||||||||||||||||||||| ||||||||||| ||| || |||||||||||||||||||||||||||| |||||||||||  |||||||||||| ||||    
T  53835089 aatagagatgttgtcgcttaggaataatctaagcagatctaaatatatttttgtggcacttgttaaactaatgagatatatacattgagattcaccttaa 53834990  T
Q  390 attatttgtgacat 403  Q
    | |||| |||||||    
T  53834989 aatattggtgacat 53834976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 22604482 - 22604566
Alignment:
Q  140 ttaattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    |||||||| | |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||    
T  22604482 ttaattttgggttaaaaatgcaatacacaagtggaggcaagtggggtcgcttgaccccattgcccccacattgtattcgtgcctg 22604566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 7138736 - 7138632
Alignment:
Q  267 tgatatgcattagtgaaacaagtgtaatagagat-gttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatga 365  Q
    |||||||||| ||||||||||| | ||||||||| ||| ||| ||| ||||||||||||||||  ||  |||||||||||||||||| ||||||||||||    
T  7138736 tgatatgcataagtgaaacaagagcaatagagattgttatcgtttaaaaataatctaagtagatatgtgtatatttttgtggcacttattaaactcatga 7138637  T
Q  366 gatat 370  Q
    |||||    
T  7138636 gatat 7138632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 50093661 - 50093729
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    ||||||| |||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||    
T  50093661 taattttggattaaaaatacaatacacatgtggaggcaagtggggtcgcttgaccccattgcccccaca 50093729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 282 - 408
Target Start/End: Original strand, 14656358 - 14656485
Alignment:
Q  282 aaacaagtgtaatagagatgttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcat--gagatatatattgaga 379  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||  |||| |||| |||| |||||||||  || |||||||||||||    
T  14656358 aaacaagtgtgatagacatgttgtcgcttagaaataatctaagtagacgtgtatat-gttttatggctcttgataaactcataagatatatatattgaga 14656456  T
Q  380 ttcacattaaattatttgtgacattttat 408  Q
    | ||| ||| | |||| ||||||| ||||    
T  14656457 tacactttataatattggtgacatattat 14656485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 54378403 - 54378471
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    ||||||| | |||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||||    
T  54378403 taattttgggttaaaaatacaatacacatgtggaggcaagtggggtcgcttgaccccattgtccccaca 54378471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 11559861 - 11559947
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctgcat 227  Q
    ||||||| | |||||||||||||||||| ||||||| ||||||| |||||||| || ||||||| |||| |  || |||||||||||    
T  11559861 taattttgggttaaaaatacaatacacatgtggaggtaagtggggtcgcttgacccgattgcccacacactagatccgtgcctgcat 11559947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 141 - 227
Target Start/End: Original strand, 11569130 - 11569216
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctgcat 227  Q
    ||||||| | |||||||||||||||||| ||||||| ||||||| |||||||| || ||||||| |||| |  || |||||||||||    
T  11569130 taattttgggttaaaaatacaatacacatgtggaggtaagtggggtcgcttgacccgattgcccacacactagatccgtgcctgcat 11569216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 11559767 - 11559874
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatatttaatt 116  Q
    ||||||||||||||||| ||||||| | ||| |||||||||||||||||||   ||||||| | ||| |||| || |||||| |||| |||||| |||||    
T  11559767 gatccttcttaattttgaaatttttgg-agtgtaataaatagactatgtgaagacaataatactatacaaagaggtgtcaaactagatatatatctaatt 11559865  T
Q  117 tttggttaa 125  Q
    || ||||||    
T  11559866 ttgggttaa 11559874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 125
Target Start/End: Original strand, 11569036 - 11569143
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatatttaatt 116  Q
    ||||||||||||||||| ||||||| | ||| |||||||||||||||||||   ||||||| | ||| |||| || |||||| |||| |||||| |||||    
T  11569036 gatccttcttaattttgaaatttttgg-agtgtaataaatagactatgtgaagacaataatactatacaaagaggtgtcaaactagatatatatctaatt 11569134  T
Q  117 tttggttaa 125  Q
    || ||||||    
T  11569135 ttgggttaa 11569143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 141 - 181
Target Start/End: Original strand, 54783835 - 54783875
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagt 181  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  54783835 taattttagattaaaaatacaataaacaagtggaggcaagt 54783875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 143 - 217
Target Start/End: Complemental strand, 25745834 - 25745760
Alignment:
Q  143 attttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattc 217  Q
    ||||||| ||||||||||||||  |||||||||||||| ||| |||  | | |||||||||||| ||||||||||    
T  25745834 attttaggttaaaaatacaataaccaagtggaggcaagaggggtcgactaaccccattgcccccgcattgaattc 25745760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 50093570 - 50093667
Alignment:
Q  22 cttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatatttaatttt 118  Q
    ||||||| |||| |||||||||||||| ||||||||||| | |||||   ||||||| | |||||||| | ||||||| |||| |||||| |||||||    
T  50093570 cttcttagttttataattttttgtagtgtaataaatagaatgtgtgaagacaataatactatataaagagtggtcaaactagatatatatctaatttt 50093667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 98
Target Start/End: Original strand, 54378312 - 54378393
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaa 98  Q
    ||||||||||| |||||||||||||| || | ||||||||||||||||| |   ||||||| | |||||||| |||||||||    
T  54378312 gatccttcttagttttgtaattttttataatgtaataaatagactatgtaaaaacaataatactatataaagaggggtcaaa 54378393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 22604419 - 22604458
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaat 57  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  22604419 gatccttcttagttttgtaattttttgtagtgtaataaat 22604458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 7e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 15075358 - 15075267
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctgcatgtgta 232  Q
    ||||||| | |||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||| || ||||||||||||||||    
T  15075358 taattttgggttaaaaatgcaatacacaagtggaggcaagtggggtcgcttgaccccattgcccccacattgtatccgtgcctgcatgtgta 15075267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 2751538 - 2751466
Alignment:
Q  154 aaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctgca 226  Q
    ||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| || | ||||||||    
T  2751538 aaaatacaatacacaggtggaggcaagtggggtcgcttgaccccattgcccccacattgtatccatgcctgca 2751466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 4975618 - 4975702
Alignment:
Q  140 ttaattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    |||||||| | ||||||||||||||||||||||||  |||||||| |||||||| ||||||||||||| |||| || ||||||||    
T  4975618 ttaattttgggttaaaaatacaatacacaagtggatacaagtggggtcgcttgaccccattgcccccatattgtatccgtgcctg 4975702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 20990947 - 20991015
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    |||||||  ||||||| ||||||||||| ||||||||||||||| |||||||| ||| |||||||||||    
T  20990947 taattttgcattaaaagtacaatacacatgtggaggcaagtggggtcgcttgaccccgttgcccccaca 20991015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 150 - 205
Target Start/End: Complemental strand, 25380604 - 25380549
Alignment:
Q  150 attaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccc 205  Q
    |||||||||||||||||| ||||||||||||||||||||  | |||||||||||||    
T  25380604 attaaaaatacaatacacgagtggaggcaagtgggatcggcttatcccattgcccc 25380549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 226
Target Start/End: Complemental strand, 13322441 - 13322365
Alignment:
Q  150 attaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctgca 226  Q
    ||||||||||||||| |||| |||||| ||||| | ||| || |||||||||||  ||||||||||| |||| ||||    
T  13322441 attaaaaatacaataaacaaatggaggtaagtgtggtcggttcatcccattgcctacacattgaatttgtgcatgca 13322365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 4975367 - 4975406
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaat 57  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  4975367 gatccttcttagttttgtaattttttgtagtataataaat 4975406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 2751624 - 2751586
Alignment:
Q  19 atccttcttaattttgtaattttttgtagtttaataaat 57  Q
    |||||||||| ||||||||||||||||||| ||||||||    
T  2751624 atccttcttagttttgtaattttttgtagtgtaataaat 2751586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 110
Target Start/End: Original strand, 20990862 - 20990943
Alignment:
Q  30 ttttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatat 110  Q
    |||||||||||||| |||| ||||||||||||||| |||   |||||||   |||||||| ||||||||| |||| ||||||    
T  20990862 ttttgtaattttttatagtgtaataaatagactatttgaagacaataatatgatataaagaggggtcaaattagatatatat 20990943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 302 - 380
Target Start/End: Complemental strand, 10945675 - 10945597
Alignment:
Q  302 ttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagat 380  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||    
T  10945675 ttgtcgcttagaaataatctaagtagacctgaatataattttgtggcacttgctaaactcaagagatatatattaagat 10945597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 10939806 - 10939734
Alignment:
Q  302 ttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatat 374  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||    
T  10939806 ttgtcgcttagaaataatctaagtagatctgaatataattttgtggcacttgctaaactcaagagatatatat 10939734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Complemental strand, 30870213 - 30870129
Alignment:
Q  140 ttaattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    |||||||| | |||||||| ||||||||||||| ||||||||||| || ||||| |||||||||||||||||| || ||||||||    
T  30870213 ttaattttgggttaaaaatgcaatacacaagtgaaggcaagtggggtcacttgaccccattgcccccacattgtatccgtgcctg 30870129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 34214489 - 34214576
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctgcatg 228  Q
    |||||||| |||||||||||||||  |||||||||||||||||| ||| |||| ||||||||||||||| || || ||| ||||||||    
T  34214489 taattttatattaaaaatacaataagcaagtggaggcaagtggggtcggttgaccccattgcccccacactgcatccgtccctgcatg 34214576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 204
Target Start/End: Complemental strand, 8907889 - 8907826
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgccc 204  Q
    ||||||| | |||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||    
T  8907889 taattttgggttaaaaattcaatacacatgtggaggcaagtggggtcgcttgaccccattgccc 8907826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 141 - 224
Target Start/End: Original strand, 29454489 - 29454572
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    ||||||| | ||||||||||||||||||  || ||||||||||| |||||||| |||||||| |||||| |  |||||||||||    
T  29454489 taattttgggttaaaaatacaatacacatttgaaggcaagtggggtcgcttgaccccattgctcccacactagattcgtgcctg 29454572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 142 - 184
Target Start/End: Original strand, 17354200 - 17354242
Alignment:
Q  142 aattttagattaaaaatacaatacacaagtggaggcaagtggg 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||    
T  17354200 aattttagattaaaaatacaataaacaagtggaggcaagtggg 17354242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 29454353 - 29454403
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtga 68  Q
    ||||||||||| ||||||||||||||||||| ||||||||| || ||||||    
T  29454353 gatccttcttagttttgtaattttttgtagtgtaataaataaacaatgtga 29454403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Complemental strand, 30870283 - 30870244
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaat 57  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  30870283 gatccttcttagttttgtaattttttgtagtgtaataaat 30870244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 2e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 244 - 395
Target Start/End: Original strand, 24188377 - 24188528
Alignment:
Q  244 agaagctcatgaaggtaaatatgtgatatgcattagtgaaacaagtgtaatagagatgttgtcgcttagaaataatctaagtagacctgaatatattttt 343  Q
    |||| ||||||||  || |||| ||||||| ||||||  |||||||| ||||||||| |||||||||| |  |||| ||||  ||| || ||||||||||    
T  24188377 agaaactcatgaaaatacatatatgatatgtattagtctaacaagtgaaatagagattttgtcgcttaaagttaatttaagaggacttgtatatattttt 24188476  T
Q  344 gtggcacttgttaaactcatgagatatatattgagattcacattaaattatt 395  Q
    |||||||||| ||||||||||||||||||||| |||| ||| ||||| ||||    
T  24188477 gtggcacttgataaactcatgagatatatatttagatacaccttaaaatatt 24188528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 302 - 397
Target Start/End: Complemental strand, 49389288 - 49389193
Alignment:
Q  302 ttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagattcacattaaattatttg 397  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||| |||| |||  |||| ||||||    
T  49389288 ttgtcgcttagaaataatctaagtagacttgaatataattttgtggcacttgctaaactcaagagatatatattaagatacaccgtaaaatatttg 49389193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 140 - 224
Target Start/End: Original strand, 25878814 - 25878898
Alignment:
Q  140 ttaattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgcctg 224  Q
    |||||||| | |||||||| ||||| ||||||||||||||||||| |||||||| |||||||| ||||||||| || ||||||||    
T  25878814 ttaattttgggttaaaaatgcaatatacaagtggaggcaagtggggtcgcttgaccccattgctcccacattgtatccgtgcctg 25878898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 141 - 208
Target Start/End: Complemental strand, 33372372 - 33372305
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccac 208  Q
    ||||||| | || ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  33372372 taattttgggttgaaaatacaatacacatgtggaggcaagtggggtcgcttgaccccattgcccccac 33372305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 10917849 - 10917799
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtga 68  Q
    |||||||| || |||| |||||||||||||| |||||||||||||||||||    
T  10917849 gatccttcctagttttataattttttgtagtgtaataaatagactatgtga 10917799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 209
Target Start/End: Original strand, 28007599 - 28007657
Alignment:
Q  151 ttaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    ||||||||||| |||||| ||||||||||||||| | ||||||  ||||||||||||||    
T  28007599 ttaaaaatacagtacacatgtggaggcaagtggggtggcttgactccattgcccccaca 28007657  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 110
Target Start/End: Original strand, 28007492 - 28007585
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaatagactatgtgagtgcaataattcaatataaag-ggggtcaaagtagacatatat 110  Q
    ||||||||||| |||| ||||||||| |||| ||||| |||||||||||||   ||||||| | |||||||| || |||||| |||| ||||||    
T  28007492 gatccttcttagttttataattttttatagtgtaatagatagactatgtgaagacaataatactatataaagaggagtcaaactagatatatat 28007585  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 30936779 - 30936713
Alignment:
Q  142 aattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattg 212  Q
    |||||||| ||||||||||||    |||||||||||||||||| ||| ||||  |||||||||||||||||    
T  30936779 aattttaggttaaaaatacaa----caagtggaggcaagtggggtcggttgactccattgcccccacattg 30936713  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 141 - 184
Target Start/End: Complemental strand, 10917754 - 10917711
Alignment:
Q  141 taattttagattaaaaatacaatacacaagtggaggcaagtggg 184  Q
    ||||||||| ||||||||| |||||||| |||||||||||||||    
T  10917754 taattttaggttaaaaatataatacacatgtggaggcaagtggg 10917711  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 25878744 - 25878783
Alignment:
Q  18 gatccttcttaattttgtaattttttgtagtttaataaat 57  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  25878744 gatccttcttagttttgtaattttttgtagtataataaat 25878783  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 32990778 - 32990700
Alignment:
Q  143 attttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgc 221  Q
    ||||||| ||||||| ||||||  ||||||||||||||| || |||  ||| ||||||| || ||||||||||| ||||    
T  32990778 attttaggttaaaaacacaataaccaagtggaggcaagtagggtcgggtgaccccattgtcctcacattgaatttgtgc 32990700  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 33372462 - 33372417
Alignment:
Q  22 cttcttaattttgtaattttttgtagtttaataaatagactatgtga 68  Q
    |||||||||||| |||||||| ||||| |||||||||||||||||||    
T  33372462 cttcttaattttataattttt-gtagtctaataaatagactatgtga 33372417  T

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Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 302 - 374
Target Start/End: Complemental strand, 24043335 - 24043263
Alignment:
Q  302 ttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatat 374  Q
    ||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||    
T  24043335 ttgtcgcttagaaataatctaagtagatctgaatataattttgtggcacttgctaaactcaagagatatatat 24043263  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 299 - 403
Target Start/End: Complemental strand, 18812624 - 18812521
Alignment:
Q  299 atgttgtcgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatat--attgagattcacattaaattattt 396  Q
    ||||||||||||| || |||| |||  ||||||||||||| |||||||||||| ||  ||||||||||||||||  |||||||||||| ||||| |||      
T  18812624 atgttgtcgcttaaaattaatttaaacagacctgaatata-ttttgtggcactcgt--aactcatgagatatatacattgagattcaccttaaaatatcg 18812528  T
Q  397 gtgacat 403  Q
    |||||||    
T  18812527 gtgacat 18812521  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 221
Target Start/End: Original strand, 292450 - 292527
Alignment:
Q  142 aattttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattgaattcgtgc 221  Q
    |||||||| ||||||||||||||  |||| ||||||||||||||||  |||| ||||||| |||||||||| ||||||||    
T  292450 aattttaggttaaaaatacaataagcaag-ggaggcaagtgggatcagttgaccccattg-ccccacattggattcgtgc 292527  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 292382 - 292410
Alignment:
Q  15 taagatccttcttaattttgtaatttttt 43  Q
    |||||||||||||||||||||||||||||    
T  292382 taagatccttcttaattttgtaatttttt 292410  T

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Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 306 - 397
Target Start/End: Original strand, 13817476 - 13817567
Alignment:
Q  306 cgcttagaaataatctaagtagacctgaatatatttttgtggcacttgttaaactcatgagatatatattgagattcacattaaattatttg 397  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||| |||||||||||| |||| |||  |||| ||||||    
T  13817476 cgcttagaaataatctaagtagatctgaatataattttgtggcacttgctaaactcaagagatatatattaagatacactgtaaaatatttg 13817567  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 339 - 403
Target Start/End: Complemental strand, 32354155 - 32354091
Alignment:
Q  339 tttttgtggcacttgttaaactcatgagatatatattgagattcacattaaattatttgtgacat 403  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||| ||||| |||| |||||||    
T  32354155 tttttgtggtacttgataaactcatgagatatatattgagatacaccttaaaatattggtgacat 32354091  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 212
Target Start/End: Original strand, 42594551 - 42594618
Alignment:
Q  145 tttagattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccacattg 212  Q
    ||||| ||||||||||||||  |||||||||||||||||| ||| |||| ||||||||| ||||||||    
T  42594551 tttaggttaaaaatacaataagcaagtggaggcaagtggggtcggttgaccccattgccaccacattg 42594618  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 23429148 - 23429208
Alignment:
Q  149 gattaaaaatacaatacacaagtggaggcaagtgggatcgcttgatcccattgcccccaca 209  Q
    ||||||||||||||||  |||||||||||||||||| ||| |||| ||| |||||||||||    
T  23429148 gattaaaaatacaataagcaagtggaggcaagtggggtcggttgaccccgttgcccccaca 23429208  T

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