View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_37 (Length: 408)
Name: NF6698_low_37
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Complemental strand, 23485911 - 23485532
Alignment:
| Q |
1 |
gctacatatagctaatatcctaaaattgatctagggtatattaccaaatcaaaatcagatctattaaaatcaaaatctacaattcccaaatcgaaagaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23485911 |
gctacatatagctaatatcctaaaattgatctagggtatattaccaaatcaaaatcagatctattaaaatcaaaatctacaattcccaaatcgaaagaaa |
23485812 |
T |
|
| Q |
101 |
gaagaatcatatacctttgcttgcgctgataagaaagaaaccatcaggagtaacaggactgtaaaagagatcaacaactggacgagagtgaccatgacaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
23485811 |
gaagaatcatatacctttgcttgcgctgataagaaagaaaccatcaggagtaacaggactgtaaaagagatcaacaactggacgagagtgaccgtgacaa |
23485712 |
T |
|
| Q |
201 |
acaagaggtaccgtaacttttttcttttccatttcttgtaaaatctcacaaataatttcttgattctttgaactattgatagtatgaaaccctaaaagca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23485711 |
acaagaggtaccgtaacttttttcttttccatttcttgtaaaatctcacaaataatttcttgattctttgaactattgatagtatgaaaccctaaaagca |
23485612 |
T |
|
| Q |
301 |
aaagaagaacaacaacaacaccactaataacaagaaatgaaatgattgatcgaaacggtaacggcggtgttacgaaaagtaacacag |
387 |
Q |
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||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
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| T |
23485611 |
aaagaagaagaacaacaa---cactactaacaagaaatgaaatgatt----gaaacagtaacggcggtgttacgaaaagtaacacag |
23485532 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 387
Target Start/End: Complemental strand, 35713046 - 35712948
Alignment:
| Q |
284 |
atgaaaccctaaaagcaaaagaagaacaacaacaacaccactaataacaa-gaaatgaaatgattgatcgaaacggtaacggcggtgttacgaaaagtaa |
382 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35713046 |
atgaaaccctaaaagcaaaagaagaacaacaaca------ctaataacaaagaaatgaaaggattgatcgaaacggtaacggcggtgttacgaaaagtaa |
35712953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 284 - 387
Target Start/End: Original strand, 13385148 - 13385246
Alignment:
| Q |
284 |
atgaaaccctaaaagcaaaagaagaacaacaacaacaccactaataacaa-gaaatgaaatgattgatcgaaacggtaacggcggtgttacgaaaagtaa |
382 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
13385148 |
atgaaaccctaaaagcaaaagaagaacaacaaca------ctaataacaaagaaatgaaatgatttatcgaaacggtaacggtggtgttacgaaaagtaa |
13385241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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