View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_38 (Length: 407)
Name: NF6698_low_38
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 52516126 - 52515757
Alignment:
| Q |
16 |
aatatagtactaggaataaaagtactagaatgaaaattggggcagcttcaattgtagaaaagattgtctaatatcagtttgtttgacaacgtacaagtac |
115 |
Q |
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| T |
52516126 |
aatatagtactaggaataaaagtactagaatgaaaattggggcagcttcaattgtagaaaagattgtcaaatatcagtttgtttgacaacgtgtaagtac |
52516027 |
T |
|
| Q |
116 |
tagtaacaagtttgtttgacatcatgtaagtactagtaacgagagttgaccagataaaggatattccaatagtcagggtgacaaaagtaagccaaactag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
52516026 |
tagtaacaagtttgtttgacatcatgtaagtactagtaacgagagttgaccagataaaggatattccattagtcagggtgacaaaagtaagccaaactag |
52515927 |
T |
|
| Q |
216 |
tacggagagatttagtgataaacgttctacctttaaacttaatataggattgcgaattatagtgctgtttgattcttgcagtcaaccccacctagtggta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52515926 |
tacggagagatttagtgataaacgttctacctttaaacttaatataggattgcgaattatagtgctgtttgattcttgcagtcaaccccacctagtggta |
52515827 |
T |
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| Q |
316 |
tagggtttgatatatgttggtttaaactttgtttttccttgttaaccattctttcttttttggaagtggg |
385 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52515826 |
tagggtttgatatatgttggtttaaactttgtttttccttgttaaccattctttcttttttggaagtggg |
52515757 |
T |
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