View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_47 (Length: 368)
Name: NF6698_low_47
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_47 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 368
Target Start/End: Original strand, 26973437 - 26973796
Alignment:
| Q |
10 |
atgaacatgcatcacgttattaagaaaatgaaaataagaaaggaaagtcattaatagtagtaacgatttccattaacaattnnnnnnnnn-tgaaagtat |
108 |
Q |
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| T |
26973437 |
atgaacatgcatcagcttattaaaaaaatgaaaataaaaaaggaaagtcattaatagtagtaacgatttccattaacaatttaaaaaaaaatgaaagtat |
26973536 |
T |
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| Q |
109 |
cggtcattctcaannnnnnncatcttgtgaaaaatcgcccaagttgttggtggcagccagaacttaccctaattttgtaatnnnnnnnnngttgcaaaag |
208 |
Q |
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| T |
26973537 |
cggtcattctcaatttttttcatcttgtgaaaaatcgcccaagttgttggtggcagccagaacttaccctaattttgtaataaaaaaaaagttgcataag |
26973636 |
T |
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| Q |
209 |
cttgattagttagatgctttgattaaatataaaaatcaaactattaccctaatttttcaaatactttttattttatttctaatggtaatcaatatgtaat |
308 |
Q |
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| T |
26973637 |
cttgattagttagatgctttgattaaatataaaaatcaaactattaccctaatttttcaaatactttatattttatttctaatggtaatcaatatgtaat |
26973736 |
T |
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| Q |
309 |
tacttatgaacatgttgagagttcaatcatgtatnnnnnnngtaaatggttctgttgttg |
368 |
Q |
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| T |
26973737 |
tacttatgaacatgttgagagttcaatcatatataaaaaaagtaaatggttctgctgttg |
26973796 |
T |
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