View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6698_low_48 (Length: 358)
Name: NF6698_low_48
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_48 |
 | |
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| [»] scaffold0559 (2 HSPs) |
| | |
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| [»] scaffold0415 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 40806892 - 40807192
Alignment:
| Q |
8 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaa |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40806892 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaa |
40806991 |
T |
|
| Q |
108 |
agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40806992 |
agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
40807091 |
T |
|
| Q |
208 |
ttaactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40807092 |
ttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
40807191 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
40807192 |
t |
40807192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 8 - 297
Target Start/End: Original strand, 40825714 - 40826003
Alignment:
| Q |
8 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaa |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
40825714 |
aatccaaagttagaacatcattactcagaacaacccctgatgaagactgtttttgctttgcctctgcaatgatttctccatttttgtttactatcctaaa |
40825813 |
T |
|
| Q |
108 |
agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
207 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| |||| ||||||| | ||||||||||||||||||||||||||||| || | |||||||||||||||| |
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|
| T |
40825814 |
agcaaatgattttcctatgctgattctttctatgcacatattttgggatcccactttaatctggcaagctattttccctgatataaccttatgacatctt |
40825913 |
T |
|
| Q |
208 |
ttaactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatccaaaagctagtaat |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
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|
| T |
40825914 |
ttaactttgaaccatggttgctcctcttgccttcttaaacttgaattgttgcaatatttgtggccttcccagcatccaaaagctagtaat |
40826003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 40811989 - 40812289
Alignment:
| Q |
8 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaa |
107 |
Q |
| |
|
||||||| ||||||| ||| ||||||||||||||||| || || ||| |||||||||||||||| ||||||||||||||||||||||||| |||| ||| |
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|
| T |
40811989 |
aatccaacgttagaacatcgttactcagaacaacccctgaggatgactgtttttgctttgcctcagcaatgatttctccatctttgtttactatccgaaa |
40812088 |
T |
|
| Q |
108 |
agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
40812089 |
agcaaatgattttcctatactgattctttctatacacaaattttggctccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
40812188 |
T |
|
| Q |
208 |
ttaactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
307 |
Q |
| |
|
||||||| ||||||||||| |||| ||||||| | ||| | ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
40812189 |
ttaacttgaaaccatggttgttccttttggcttctaaaagtagaattgttgcaatatttgtggccttcccaacatccaaaaactagtaatctctttttga |
40812288 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
40812289 |
t |
40812289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 308
Target Start/End: Original strand, 40817148 - 40817448
Alignment:
| Q |
8 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaa |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
40817148 |
aatccaaagttagaacatcattactcagaacaaccccggatgaagactgtttttgctttgcctctgcaatgatttctccatttttgtttactatcctaaa |
40817247 |
T |
|
| Q |
108 |
agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||| ||||||| ||| || | || || |||| ||||||| |
|
|
| T |
40817248 |
agcaaatgattttcctgtactgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatctt |
40817347 |
T |
|
| Q |
208 |
ttaactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
307 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40817348 |
ttaacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
40817447 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
40817448 |
t |
40817448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 10 - 297
Target Start/End: Original strand, 40805172 - 40805459
Alignment:
| Q |
10 |
tccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaaag |
109 |
Q |
| |
|
||||| ||||||| ||||||||| ||||||||||| || || ||| ||||||||||||| ||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
40805172 |
tccaacgttagaacatcattacttagaacaacccctgacgatgactgtttttgctttgcatctgcaatgatttgtccatctttgtttactatccgaaaag |
40805271 |
T |
|
| Q |
110 |
caaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctttt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||| |
|
|
| T |
40805272 |
caaatgattttcctatactgattctttctatgcataaattttggcaccccactttaatctggcaagctattttccctgtaataatcttatgacatctttt |
40805371 |
T |
|
| Q |
210 |
aactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatccaaaagctagtaat |
297 |
Q |
| |
|
|||| ||||||||||||||||| |||||| | | | | || ||| |||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
40805372 |
gacttgaaaccatggttgctcctcctggcttctaatattagagttgctgcaatatttgtgtccttcccaacatccaaaagctagtaat |
40805459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 356
Target Start/End: Original strand, 40807214 - 40807266
Alignment:
| Q |
304 |
ttgatccatgagattgacttctcttttacctttttcgtcgtagttatcaacac |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
40807214 |
ttgatccatgagattgacttctcttttaccttttttgtcgtagttatcaacac |
40807266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 40817472 - 40817520
Alignment:
| Q |
306 |
gatccatgagattgacttctcttttacctttttcgtcgtagttatcaac |
354 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
40817472 |
gatccattagattcacttctcttctaccttttttgtcatagttatcaac |
40817520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: scaffold0559
Description:
Target: scaffold0559; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 8 - 305
Target Start/End: Complemental strand, 7739 - 7439
Alignment:
| Q |
8 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagttttt-gctttgcctctgcaatgatttctccatctttgtttataatcctaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7739 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagttttttgctttgcctctgcaatgatttctccatctttgtttataatcctaa |
7640 |
T |
|
| Q |
107 |
aa-gcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatc |
205 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7639 |
aaagcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatc |
7540 |
T |
|
| Q |
206 |
ttttaactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatcc-aaaagctagtaatgtctttt |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7539 |
ttttaactttgaaccatggttgctcctcttggctttttaaacttgaattattgcaatatttgtagccttcccaacatccaaaaagctagtaatgtctttt |
7440 |
T |
|
| Q |
305 |
t |
305 |
Q |
| |
|
| |
|
|
| T |
7439 |
t |
7439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0559; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 7413 - 7360
Alignment:
| Q |
304 |
ttgatccatgagattgacttctcttttacct-ttttcgtcgtagttatcaacac |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
|
|
| T |
7413 |
ttgatccatgagattgacttctcttttacctttttttgtcgtagttatcaacac |
7360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: scaffold0415
Description:
Target: scaffold0415; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 8 - 308
Target Start/End: Complemental strand, 15216 - 14916
Alignment:
| Q |
8 |
aatccaaagttagaatatcattactcagaacaaccccggatgacgacagtttttgctttgcctctgcaatgatttctccatctttgtttataatcctaaa |
107 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
15216 |
aatccaaagttagaacatcattactcagaacaaccccggatgaagactgtttttgctttgcctctgcaatgatttctccatttttgtttactatcctaaa |
15117 |
T |
|
| Q |
108 |
agcaaatgattttcctatactgattctttctatacacaaattttggcaccccactttaatctggcaagctattttcccagagaaaaccttatgacatctt |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |||||||||||| |||| ||||||||||| ||||||| ||| || | || || |||| ||||||| |
|
|
| T |
15116 |
agcaaatgattttcctgtactgattctttctatgcacaaattttgggaccctactttaatctgacaagctacttttcctgtgataatcttagtacatctt |
15017 |
T |
|
| Q |
208 |
ttaactttgaaccatggttgctcctcttggctttttaaacttgaattgttgcaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
307 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| ||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15016 |
ttaacttggaaccatggttgttcctcttggcttccaaaattagaattgttacaatatttgtagccttcccaacatccaaaagctagtaatgtctttttga |
14917 |
T |
|
| Q |
308 |
t |
308 |
Q |
| |
|
| |
|
|
| T |
14916 |
t |
14916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0415; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 14892 - 14844
Alignment:
| Q |
306 |
gatccatgagattgacttctcttttacctttttcgtcgtagttatcaac |
354 |
Q |
| |
|
||||||| ||||| ||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
14892 |
gatccattagattcacttctcttctaccttttttgtcatagttatcaac |
14844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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