View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_5 (Length: 708)
Name: NF6698_low_5
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 190 - 451
Target Start/End: Original strand, 30652265 - 30652524
Alignment:
| Q |
190 |
taagatgaaacgatgcctaattcaaaaacaatcttattaaatcacttatgtttttcaaacttttattactcgtgtttacgtgtcagtgtcatgttcagtg |
289 |
Q |
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| T |
30652265 |
taagatgaaacgatgcctgattcaaaaacaatcttattaaatcacttatgtttttcaaactgttatcagtagtgtttacgtgtcagtgtcattttcactg |
30652364 |
T |
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| Q |
290 |
tttcaaagaatatatatatgtgcatnnnnnnnngtggagagtagctggaagagtacctgtggctgtgacagagacggagagaagaaagcagaagaaaatc |
389 |
Q |
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| T |
30652365 |
tttcaaagaatatatat--gtgcataaaaaaaagtgaagagtagctagaagagtacctgtggctgtgacagagacggagagaagaaagcagaagaaaatc |
30652462 |
T |
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| Q |
390 |
aaggaagtagtcatttggattttggaaatgtgtaaccgtttgtacttagctctttgatgagg |
451 |
Q |
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| T |
30652463 |
aaggaagtagtcatttggattttggaaatgtgtaaccgtttgtgcttagctctttgatgagg |
30652524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 509 - 702
Target Start/End: Original strand, 30652586 - 30652779
Alignment:
| Q |
509 |
acgtggttgtcatttgtttccttctttttagccattttgtgcattatgtgtttgataaccgttttgctaaagagactaggagccctttgattgttttcca |
608 |
Q |
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| T |
30652586 |
acgtggttgtcatttgtttccttctttttagccattttgtgcattatgtgtttgataaccgttttgctaaagagactagaagccctttgattgttttcca |
30652685 |
T |
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| Q |
609 |
cccagcaccacttctaaaatttctccatcacgtttcatatccttttgtttaatcacaactcacaacacagatctactctttttgttgagatatt |
702 |
Q |
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| T |
30652686 |
cccagcaccacttctaaaatttctccatcacgtttcatatccttttgtttaatcacacctcacaacacagctctactctttttgttgagatatt |
30652779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 30652042 - 30652217
Alignment:
| Q |
18 |
tggagaacaagttcttcgccgcttgggaggtgaaatccaccatctttgattgaagggtgtccttcattgctgagaattcctggccatacactttccttgc |
117 |
Q |
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| T |
30652042 |
tggagaacaagttcttcgccgcttgggaggtgaaatccgccatctttgattgaagggtgtccttcattgctgagaattcctggccatacactttccttgc |
30652141 |
T |
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| Q |
118 |
agttgtttacgagtatgagttgtgtcccgtttccatccttaacaacacctaatattattaacacaaataacctaag |
193 |
Q |
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| T |
30652142 |
agttgtttacgagtatgagttgtgtcccgtttccatccttaacaacacctaatattattaacacaaataacataag |
30652217 |
T |
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