View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_51 (Length: 335)
Name: NF6698_low_51
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_51 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 314
Target Start/End: Original strand, 30286053 - 30286350
Alignment:
| Q |
12 |
caagaatattctagaggctgccttcaatgtaagtatacaacagataagatacaatttatttagtatataccaaatggttttatttaatgtgtgtaaatat |
111 |
Q |
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| T |
30286053 |
caagaatattctagaggctgccttcaatgtaagtatacaacagat-----acaatttatttagtatatactatatggttttatttaatgtgtgtaaatat |
30286147 |
T |
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| Q |
112 |
ttactttgtccttgttacaaaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggcctta |
211 |
Q |
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| T |
30286148 |
ttactttgtccttgttacaaaatacagtccaattacgaggagatagagagggtgcttatagaagagaatgaacaagagccacaacacaggagaggcctta |
30286247 |
T |
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| Q |
212 |
ggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
311 |
Q |
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| T |
30286248 |
ggaaggatgaaaggaggcagcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
30286347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 131 - 314
Target Start/End: Original strand, 30298632 - 30298812
Alignment:
| Q |
131 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
230 |
Q |
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| T |
30298632 |
aaatacaggccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaagat---aggaggca |
30298728 |
T |
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| Q |
231 |
gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctccag |
314 |
Q |
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| T |
30298729 |
gcagagccaggattcaaatgtaatagtcaaagtatcaagagaacagattgaggaattgagcagacatgcaaaatctagctccag |
30298812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 131 - 311
Target Start/End: Original strand, 30291181 - 30291358
Alignment:
| Q |
131 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggc- |
229 |
Q |
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| T |
30291181 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcaggagcaagagccacgacacaggagaggccttagg------gataggagaca |
30291274 |
T |
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| Q |
230 |
--agcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
311 |
Q |
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| T |
30291275 |
taagcagagccaggaagcaaatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctc |
30291358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 131 - 311
Target Start/End: Original strand, 30303838 - 30304012
Alignment:
| Q |
131 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
230 |
Q |
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| T |
30303838 |
aaatataggccaattatgaggagatagagagggtgcttatagaagagcaggagcaagatccgca---caggagaggccttagg------gataggagaca |
30303928 |
T |
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| Q |
231 |
---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
311 |
Q |
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| T |
30303929 |
taagcagagccaggaagcaaatgtaatagtaaaagtatcaagggaacagattgaggaattgagcagacatgccaaatctagctc |
30304012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 131 - 311
Target Start/End: Original strand, 30314727 - 30314898
Alignment:
| Q |
131 |
aaatacagtccaattacgaggagatagagagggtgcttatagaagagcatgaacaagagccacaacacaggagaggccttaggaaggatgaaaggaggca |
230 |
Q |
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| T |
30314727 |
aaatataggccaattatgaggagatagagcgggtccttattgaagagca------agagccacaacacaggagaggccttagg------gataggagaca |
30314814 |
T |
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| Q |
231 |
---gcagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
311 |
Q |
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| T |
30314815 |
taagcagagccaggaagcagatgtaatagtcaaagtgtcaagggaacagattgaggaattgagcagacatgccaaatctagctc |
30314898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 311
Target Start/End: Original strand, 46809603 - 46809682
Alignment:
| Q |
232 |
cagagccaggaagcaaatgtaatagtaaaagtatcaagagaacagattgaagaactgagcaaaaatgccaagtctagctc |
311 |
Q |
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| T |
46809603 |
cagagccaagaagctaatgcaatagtcaaagtgtcaagagaacagattgaggaactgaggagacatgccaaatcaagctc |
46809682 |
T |
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