View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_52 (Length: 333)
Name: NF6698_low_52
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_52 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 139 - 315
Target Start/End: Complemental strand, 10198723 - 10198551
Alignment:
| Q |
139 |
tatttgttgacctacaaggaaacctaaagtttatttttcaactgcatgagagattccaaacaagctttgctaagaagtgccacattttgaagtcgagttg |
238 |
Q |
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| T |
10198723 |
tatttgttgacctacaaagaaacctaaagtttatttttcacctgcatgagagattccaaacaagctt-gctaagaagtgccacattttgaagtcgagttg |
10198625 |
T |
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| Q |
239 |
taggaatccccccaatccagcaatcttccaaagtttgataattttcttctaactaacggccatgtgcatacccttat |
315 |
Q |
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| T |
10198624 |
taggaatccccccaatccagcaatcttccaaagtttgataattttcttctaactaa---ccatgtgcatacccttat |
10198551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 10198986 - 10198855
Alignment:
| Q |
9 |
aagaaataaataatactatatagaaaagaaaaactaaaatttctcttcatttacnnnnnnnncatgtgaaattctcttcacttgcttgaatgagcataaa |
108 |
Q |
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| T |
10198986 |
aagaaataaataatactatatagaaaagaaaaactaaaatttctcttcatttaccttttt--catgtgaaaatctcttcacttacttgaatgagcataaa |
10198889 |
T |
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| Q |
109 |
gaaataattaaaaataataaatgacaagtttatt |
142 |
Q |
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| T |
10198888 |
gaaataattaaaaataataaatgacaagtttatt |
10198855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 10132791 - 10132730
Alignment:
| Q |
80 |
ttctcttcacttgcttgaatgagcataaagaaataattaaaaataataaatgacaagtttat |
141 |
Q |
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| T |
10132791 |
ttctctttgcttacttgaatgagtagaaagaaataactaaatataacaaatgacaagtttat |
10132730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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