View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_53 (Length: 327)
Name: NF6698_low_53
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_53 |
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| [»] scaffold0045 (5 HSPs) |
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Alignment Details
Target: scaffold0045 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 144 - 304
Target Start/End: Original strand, 19990 - 20150
Alignment:
| Q |
144 |
ttaataatacctatttagtcactaggaaaggctaatttaatacatttgcgaagaatttattgtgtactactagtcaatgtagcataaatgacttaatagg |
243 |
Q |
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| T |
19990 |
ttaataatacctatttagtcactaggaaaggctaatttaatacatttgctaagaatttattgtgtactactagtcaatgtagcataaatgacttaatagg |
20089 |
T |
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| Q |
244 |
cccttttagtgtaatttagtttatgttgataaattatgatccttaagatttaatagcgcct |
304 |
Q |
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| T |
20090 |
cccttttagtgtaatttagtttatgttgataaattatgatccttaagatttaatagcgcct |
20150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 19279 - 19408
Alignment:
| Q |
18 |
attataactagattaagcctaaggtatgcataataagattattcaagattatcactagataaattcatatttatcatgaattctcttactccaaaagact |
117 |
Q |
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| T |
19279 |
attataactagattaagcctaaggtatgcataataagattattcaagattatcactagataaattcatatttatcatgaattctcttactccaaaagact |
19378 |
T |
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| Q |
118 |
aacattatttcaaaatacatattagattaa |
147 |
Q |
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| T |
19379 |
aacattatttcaaaatacatattagattaa |
19408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 49763 - 49892
Alignment:
| Q |
18 |
attataactagattaagcctaaggtatgcataataagattattcaagattatcactagataaattcatatttatcatgaattctcttactccaaaagact |
117 |
Q |
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| T |
49763 |
attataactagattaagcctatggtatgcataataagattattcaagattatcactagataaattcatatttatcatgaattctcttactccaaaagact |
49862 |
T |
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| Q |
118 |
aacattatttcaaaatacatattagattaa |
147 |
Q |
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| T |
49863 |
aacattatttctaaatacacattagattaa |
49892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 187 - 327
Target Start/End: Original strand, 50741 - 50882
Alignment:
| Q |
187 |
atttgcgaagaatttattgtgtactactagtcaatgtagcataaatgact--taataggcccttttagtgtaatttagtttatgttgataaattatgatc |
284 |
Q |
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| T |
50741 |
atttgctaagaaattattgtgtactactagtcaatgtagcataaatgactattaataggcccttttagtgtaatttagtttatgttgataaattatgatc |
50840 |
T |
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| Q |
285 |
cttaagatttaatagcgcctttaataaattagtagcatcacat |
327 |
Q |
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| T |
50841 |
cttaaga-ttaatagcgcctttaataaattagtaacatcacat |
50882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 50503 - 50542
Alignment:
| Q |
144 |
ttaataatacctatttagtcactaggaaaggctaatttaa |
183 |
Q |
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| T |
50503 |
ttaataatacctatttagtcactaggaaaggctaatttaa |
50542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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