View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_56 (Length: 313)
Name: NF6698_low_56
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 913145 - 913424
Alignment:
| Q |
18 |
atttttgattccacacacactattgattgagttgcttgtgtatgtttgcaatgttttcatcaacattgcagatacttctacatggttgttatatactatc |
117 |
Q |
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| T |
913145 |
atttttgattccacacacactattgattgagttgcttgtgtatgttcgcaatgttttcatcaacattgcagatacttctacatggttgttatatactatc |
913244 |
T |
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| Q |
118 |
atcaatgcctttcttcttgttagaggagtaatcattccagtcagacacaatcatggagatagtgtggcaattattgtctaacggctcagcagcgaggtga |
217 |
Q |
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| T |
913245 |
atcaatgcctttcttcttgttagaggagtaatcattccagtcagacacaatcatggagacagtgtggcaattattgtctaacggctcagcagcgaggtga |
913344 |
T |
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| Q |
218 |
aaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagac---tcggtaccggtaattgtgt |
294 |
Q |
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| T |
913345 |
aaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgt |
913424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 134 - 294
Target Start/End: Complemental strand, 889155 - 888992
Alignment:
| Q |
134 |
ttgttagaggagtaatcattccagtcagacacaatcatggagatagtgtggcaattattgtctaacggctcagcagcgaggtgaaaggtctttttcgagg |
233 |
Q |
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| T |
889155 |
ttgttagaggagtaatcattccagtcagacacaatcatggagacagtgtggcaattattgtctaacggctcagcagcgaggtgaaaggtctttttcgagg |
889056 |
T |
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| Q |
234 |
atgtgaacaacatggttgaatctatttagtaatgataaagac---tcggtaccggtaattgtgt |
294 |
Q |
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| T |
889055 |
atgtgaacaacatggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgt |
888992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 294
Target Start/End: Original strand, 1002085 - 1002173
Alignment:
| Q |
208 |
agcgaggtgaaaggtctttttcgaggatgtgaacaacatggttgaatctatttagtaatgataaagac---tcggtaccggtaattgtgt |
294 |
Q |
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| T |
1002085 |
agcgaggtgaaaggtcttttg-gaggatgtgaacaacatggttgaatctacttcgtcttgaaaaagacacatcggtaccggtaattgtgt |
1002173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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