View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_64 (Length: 289)
Name: NF6698_low_64
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_64 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 54632063 - 54631790
Alignment:
| Q |
18 |
agaaggacaacatatactattgagaattttccatgaaagcactgtcaatgtcctcaaaaagtcagtta-------------ttcacctagaacttgaaga |
104 |
Q |
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| T |
54632063 |
agaaggacaacatatactattgagaattttccatgaaagcactgtcaatgtcctcaaaaagtcagtcaagaaaagaacttcttcacctagaagttgaaga |
54631964 |
T |
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| Q |
105 |
gttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatcttctttaac |
204 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54631963 |
gttcagatttcatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatcttctttaac |
54631864 |
T |
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| Q |
205 |
agaagtcttcgcaagaaatttcaacacatcaaaaacagttaacgtctccttctccttatccttatccttatcct |
278 |
Q |
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| T |
54631863 |
agaagtcttcgcaagaaatttcaacacatcaaaaacagttaacgtctccttctccttctccttctccttatcct |
54631790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 249 - 280
Target Start/End: Complemental strand, 54631807 - 54631776
Alignment:
| Q |
249 |
tctccttctccttatccttatccttatcctcc |
280 |
Q |
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| T |
54631807 |
tctccttctccttatccttatccttatcctcc |
54631776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 98 - 199
Target Start/End: Complemental strand, 8059 - 7958
Alignment:
| Q |
98 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
197 |
Q |
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| T |
8059 |
ttgaagagttcagatttcatatcgtccgaccaccaacttggacgaggaaatttaataccggcacgcttaagagattccaacaaagtaagaccatcatctt |
7960 |
T |
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| Q |
198 |
ct |
199 |
Q |
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|| |
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| T |
7959 |
ct |
7958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 98 - 241
Target Start/End: Complemental strand, 18189535 - 18189389
Alignment:
| Q |
98 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
197 |
Q |
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| T |
18189535 |
ttgaagagttgagatttcatatcctccggccaccaacttggacgaggtaaattaacaccagaacgctttagagtttccagcaaagtaagaccatcatctt |
18189436 |
T |
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| Q |
198 |
c---tttaacagaagtcttcgcaagaaatttcaacacatcaaaaaca |
241 |
Q |
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| |||| |||| |||| || ||||||||||| |||||||||||| |
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| T |
18189435 |
cttttttatcagatgtctctgcgagaaatttcaatacatcaaaaaca |
18189389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 200
Target Start/End: Original strand, 39487130 - 39487232
Alignment:
| Q |
98 |
ttgaagagttcagattccatatcgtcgggccaccagctcggacgaggaaatttaataccagcacgctttaaagtttccaacaaagtaagaccatcatctt |
197 |
Q |
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||||||| ||| |||| ||||||||| ||||||||||| ||||||||||| |||||||||||||||| |||||| | || ||||||| || |||||| |
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| T |
39487130 |
ttgaagatttcggatttcatatcgtccggccaccagcttggacgaggaaaagtaataccagcacgcttcccagtttcgaccacagtaagaacaccatctt |
39487229 |
T |
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| Q |
198 |
ctt |
200 |
Q |
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||| |
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| T |
39487230 |
ctt |
39487232 |
T |
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