View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_65 (Length: 286)
Name: NF6698_low_65
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 21 - 278
Target Start/End: Complemental strand, 42843294 - 42843037
Alignment:
| Q |
21 |
attctcactcttctcgatttgaatcttcaacttgaaaatctcctcttccgaaagctctttttgtttatgcaactccttctctttcagcctcaattcctca |
120 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42843294 |
attctcactcttctcaatttgaatcttcaacttgaaaatctcctcttccgaaagcactttttgtttatgcaactccttctctttcagcttcaattcctca |
42843195 |
T |
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| Q |
121 |
cataaatcatcaaacagaccctcactactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagct |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42843194 |
cataaatcatcaaacagaccctcactactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagct |
42843095 |
T |
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| Q |
221 |
cttcctccttttccatgaactttttgagcaaattatcataacttctattgtctatctc |
278 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42843094 |
cttcctccttttccatgaactttttgagcaaattatcataacttctattgtctatctc |
42843037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 44 - 278
Target Start/End: Complemental strand, 42819350 - 42819116
Alignment:
| Q |
44 |
tcttcaacttgaaaatctcctcttccgaaagctctttttgtttatgcaactccttctctttcagcctcaattcctcacataaatcatcaaacagaccctc |
143 |
Q |
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||||| ||||||||||||| | ||| |||| ||| ||||||||||||| ||| | |||||||||| ||||||| ||||| | || ||||||| |||||| |
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| T |
42819350 |
tcttctacttgaaaatctctttttctgaaacctccttttgtttatgcatctcgtcctctttcagcttcaattcttcacacacattatcaaactgaccctt |
42819251 |
T |
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| Q |
144 |
actactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttccatgaacttt |
243 |
Q |
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|| ||||||||||||||||||| || ||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||| || || ||| ||||| |
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| T |
42819250 |
gctgttctcaacttgaaccttcaagttgataacctctttttccgaaagttgaagctttaaattggtaactcttagctcttcctcgttctcaatgcacttt |
42819151 |
T |
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| Q |
244 |
ttgagcaaattatcataacttctattgtctatctc |
278 |
Q |
| |
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|||||||| |||||||||||||||||||| ||||| |
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| T |
42819150 |
ttgagcaacttatcataacttctattgtcaatctc |
42819116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 137 - 272
Target Start/End: Complemental strand, 42834453 - 42834318
Alignment:
| Q |
137 |
gaccctcactactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttccat |
236 |
Q |
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||||||||| | || ||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||| || | || |
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| T |
42834453 |
gaccctcaccattcccaacttggaccttcaactttatattctcttcttctgaaagtcgaagctttgaattggtaacccttagctcttcctccgttccaat |
42834354 |
T |
|
| Q |
237 |
gaactttttgagcaaattatcataacttctattgtc |
272 |
Q |
| |
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| ||||||| ||||| |||||||||||||||||| |
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| T |
42834353 |
aatttttttgatcaaatcatcataacttctattgtc |
42834318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 39 - 116
Target Start/End: Complemental strand, 42843393 - 42843316
Alignment:
| Q |
39 |
ttgaatcttcaacttgaaaatctcctcttccgaaagctctttttgtttatgcaactccttctctttcagcctcaattc |
116 |
Q |
| |
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|||||||||||| ||||||||||| |||| ||||||| |||||||||| |||||||||||||||||| ||||||| |
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| T |
42843393 |
ttgaatcttcaaattgaaaatctcttcttttaaaagctccttttgtttattcaactccttctctttcaggttcaattc |
42843316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 64 - 278
Target Start/End: Complemental strand, 12622024 - 12621810
Alignment:
| Q |
64 |
tcttccgaaagctctttttgtttatgcaactccttctctttcagcctcaattcctcacataaatcatcaaacagaccctcactactctcaacttgaacct |
163 |
Q |
| |
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|||| ||||||||||||||||| ||||| ||| | || |||||| ||||||| |||| | | ||||| | |||||| ||| ||||| ||||||| | |
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| T |
12622024 |
tctttcgaaagctctttttgttcatgcagctcttccttgttcagcttcaattcttcacgcaccttatcaagctgacccttgctattctcagcttgaactt |
12621925 |
T |
|
| Q |
164 |
tcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttccatgaactttttgagcaaattatcataact |
263 |
Q |
| |
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||||||||||| |||||| ||||||||||||||| || ||||| | ||| |||||||||||||| ||||| |||||||||||||||| | ||||||||| |
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| T |
12621924 |
tcaactttataatctcttgttccgaaagctgaagtttaaaattagaaactcttagctcttcctcattttctttgaactttttgagcaattgatcataact |
12621825 |
T |
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| Q |
264 |
tctattgtctatctc |
278 |
Q |
| |
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| ||||||| ||||| |
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| T |
12621824 |
tttattgtccatctc |
12621810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 278
Target Start/End: Complemental strand, 12627926 - 12627688
Alignment:
| Q |
40 |
tgaatcttcaacttgaaaatctcctcttccgaaagctctttttgtttatgcaactccttctctttcagcctcaattcctcacataaatcatcaaacagac |
139 |
Q |
| |
|
||||||||||| ||||||||||| | ||| ||| |||||||| ||||| ||| ||| | |||||||||| ||| ||| || | | || ||||| | || |
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| T |
12627926 |
tgaatcttcaatttgaaaatctcttgttctgaacgctcttttagtttacgcacctcttcctctttcagcttcagttcttcgcgcacattatcaagctcac |
12627827 |
T |
|
| Q |
140 |
cctcactactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttccatgaa |
239 |
Q |
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|||||||| |||||| || |||||||||||||||| | |||| || ||||| ||||| || ||||||| || |||||||||||||||||||| | || |
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| T |
12627826 |
cctcactattctcaatttcaaccttcaactttatagtttcttgttttgaaagttgaagtttaaaattggaaattcttagctcttcctccttttcattaaa |
12627727 |
T |
|
| Q |
240 |
ctttttgagcaaattatcataacttctattgtctatctc |
278 |
Q |
| |
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|||||| ||||| | ||||||| ||| ||||| ||||| |
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| T |
12627726 |
ctttttaagcaactcatcataagttccgttgtccatctc |
12627688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 137 - 269
Target Start/End: Original strand, 30924717 - 30924849
Alignment:
| Q |
137 |
gaccctcactactctcaacttgaaccttcaactttatattctcttcttccgaaagctgaagctttaaattggtaacccttagctcttcctccttttccat |
236 |
Q |
| |
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|||||||||| ||||| |||| ||||||||| ||| |||||||||| ||||||| ||| || ||||||| ||| | |||||||||||| |||| || |
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| T |
30924717 |
gaccctcacttttctcattttgattcttcaacttgataatctcttcttctgaaagcttaagtttcaaattggaaactcgtagctcttcctcgtttttaat |
30924816 |
T |
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| Q |
237 |
gaactttttgagcaaattatcataacttctatt |
269 |
Q |
| |
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|||||| || ||||| | |||||||||| |||| |
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| T |
30924817 |
gaacttcttcagcaattcatcataacttttatt |
30924849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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