View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_68 (Length: 273)
Name: NF6698_low_68
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_68 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 31309794 - 31309523
Alignment:
| Q |
1 |
tagtaacatgcaaaaacagagaacaagaagcataaagaaaacacagaacataggaatgtagtaaactaacctgaatcagtgttaaaaacactatcaagct |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
31309794 |
tagtaacatgcaaaaacagagaacaagaagcataaagaaaacacagaacataggaatgtagtaaactaacctgaattagtgttaacaacactatcaagct |
31309695 |
T |
|
| Q |
101 |
gaatagaaactccnnnnnnncactcccaaatctataaaaataaacagggacatttaatttaaattatacccacatgaaatttttaaaagaaaatcaataa |
200 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31309694 |
gaatagaaactcctttttttcactcccaaatctataaaaataaacagggacatttaatttaaattatacccacatgaaatttttaaaagaaaatcaataa |
31309595 |
T |
|
| Q |
201 |
aaatatgaaataagtttatagacaaacataaatatatctccaaatccaataataaacaaataattgatgggt |
272 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31309594 |
aaatatgaaataagttcatagacaaacataaatatatctccaaatccaataataaacaaataattgatgggt |
31309523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 113
Target Start/End: Complemental strand, 36920999 - 36920887
Alignment:
| Q |
2 |
agtaacatgcaaaaacagagaacaagaagcataaagaa-aacacagaacataggaatgtagtaaactaacctgaatcagtgttaaaaacactatcaagct |
100 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||| |||| |||| ||||||||| | |||| ||||||||||||||||||| | |||| |||||| |
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| T |
36920999 |
agtaacatgcaaaaacagagagcaagagccataaagaataacagagaaaataggaatgaaataaagtaacctgaatcagtgttaacagtactaacaagct |
36920900 |
T |
|
| Q |
101 |
gaatagaaactcc |
113 |
Q |
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||| ||||||||| |
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| T |
36920899 |
gaagagaaactcc |
36920887 |
T |
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