View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_7 (Length: 685)
Name: NF6698_low_7
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 23 - 680
Target Start/End: Complemental strand, 515136 - 514468
Alignment:
| Q |
23 |
cgttggaattcgcaggaacacgcagtttgttgcagcggcggcagagcagaagaagaatcagttggagaaggcagtaatggaggcattgaagttggcagaa |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||| |
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| T |
515136 |
cgttggaattcgcaggaacacgcagtttgttgcagcggctgcagagcagaagaaggatgagttggagaaggcagtaatggaggcattgaagttggcggaa |
515037 |
T |
|
| Q |
123 |
gagaacaaggcatttgaaattgtttactatccccgaggtgatgattggtgtgattttgtagtggatggtaatattgttgatgaatcaatgaagattcaat |
222 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
515036 |
gagaacaaggcatttgaaattgtttactatccccaaggtgatgattggtgtgattttgtagtggatggtaatgttgttgatgaatcaatgaagattcaat |
514937 |
T |
|
| Q |
223 |
ggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaagggacaatcactactgtatctcgtacttctaatttatggcg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
514936 |
ggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaagggacaatctctattgtatctcgtacttctaatttatggcg |
514837 |
T |
|
| Q |
323 |
catgcttcaggtata-tttcaatttattt--tttaatcttatgcataatattatccagctatgaaacacaagcagata-------ttagatacgacatgg |
412 |
Q |
| |
|
||||||||||||||| |||| ||| ||| || ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| | |
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| T |
514836 |
catgcttcaggtatagtttccttttcttttcttggatcttatgcataatattatccagctatgaaacacaagcagacattagaatttagatacgacatag |
514737 |
T |
|
| Q |
413 |
acatgacactttgaaatcaataataaatttaagaaaatcatataatagaatcgtatgtgtctgtgtcttgtcggtatcacacatcgacgtgtgtcagaca |
512 |
Q |
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| T |
514736 |
acatgacactttgaaatcaataataaatttaagaaaatcatataatagaatcgtatgtgtctgtgtcgtatcggtatcacacaccgacgtgtgtcagaca |
514637 |
T |
|
| Q |
513 |
tcaggagacgtctaatttgatgtgcccgtgcttcatagtatatagtatttggttgaagttgataaatgattc-nnnnnnnnngtataaaccgggtttgct |
611 |
Q |
| |
|
||||||||||| |||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
514636 |
tcaggagacgtttaatctgatgtgttcgtgcttcatagtatctagtatttagttgaagttgataaatgattctttttttttggtataaaccgggtttgct |
514537 |
T |
|
| Q |
612 |
ccacacacaattggtgtaaaccgggtgtacaaactcttcataagagtttttaaagttgttgcatgtcca |
680 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
514536 |
ttacacacaattgatgtaaaccgggtgtgcaaactcttcataagagtttttaaagttgttgcatgtcca |
514468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 82 - 355
Target Start/End: Original strand, 561244 - 561517
Alignment:
| Q |
82 |
agttggagaaggcagtaatggaggcattgaagttggcagaagagaacaaggcatttgaaattgtttactatccccgaggtgatgattggtgtgattttgt |
181 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
561244 |
agttggagaaggcagtaatggaggcagtgaagttggcagaggagaacaagccatttgaaattgtttactatcctagaggtgatgattggtgtgattttgt |
561343 |
T |
|
| Q |
182 |
agtggatggtaatattgttgatgaatcaatgaagattcaatggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaa |
281 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
561344 |
agtggatggtaatattgttgatgaatcaatgaagattcaatggaaccctagaatgagagttaagatgaagactgataaatcttcaaggatcccatatcaa |
561443 |
T |
|
| Q |
282 |
gggacaatcactactgtatctcgtacttctaatttatggcgcatgcttcaggtatatttcaatttattttttaa |
355 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||| |
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| T |
561444 |
gggacaatcactactgtatctcgtacttctaatttatggcgcatgcttcaggtataatttcattttttttttaa |
561517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 486 - 680
Target Start/End: Original strand, 561886 - 562079
Alignment:
| Q |
486 |
gtatcacacatcgacgtgtgtcagacatcaggagacgtctaatttgatgtgcccgtgcttcatagtatatagtatttggttgaagttgataaatgattcn |
585 |
Q |
| |
|
|||||||||| ||||||||||| || ||| | |||||||| || |||| || |||||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
561886 |
gtatcacacaccgacgtgtgtccgatatcggaagacgtcttatctgatatgtccgtgcttcatagtatctagtatttagttgaagtttataaatgatt-a |
561984 |
T |
|
| Q |
586 |
nnnnnnnngtataaaccgggtttgctccacacacaattggtgtaaaccgggtgtacaaactcttcataagagtttttaaagttgttgcatgtcca |
680 |
Q |
| |
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|| ||| | |||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||| |||||| |||||||| |
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|
| T |
561985 |
tttttttggtgtaacctgggtttgctccacacaaaattggtgtaaatcgggtgtgcaaactcttcataagagtttttaatgttgttacatgtcca |
562079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 348 - 390
Target Start/End: Original strand, 561706 - 561748
Alignment:
| Q |
348 |
ttttttaatcttatgcataatattatccagctatgaaacacaa |
390 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
561706 |
ttttttaatcttatgcataatattatctagctatgaaacacaa |
561748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 298 - 337
Target Start/End: Original strand, 565586 - 565625
Alignment:
| Q |
298 |
tatctcgtacttctaatttatggcgcatgcttcaggtata |
337 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||| |
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| T |
565586 |
tatctcgtaattctaatttatggcgcatgcttcaggtata |
565625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 272
Target Start/End: Original strand, 6446967 - 6447082
Alignment:
| Q |
159 |
ggtgatgattggtgtgattttgtagtggatggtaatattgttgatgaatcaatgaagattcaatggaa-cccta-gaatgagagttaagatgaagactga |
256 |
Q |
| |
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||||||||||||||||||||||| | ||| ||||| || |||||||| ||||||||||||| | ||| | || |||||||||||||||||| ||||| |
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|
| T |
6446967 |
ggtgatgattggtgtgattttgttggggacagtaatgttattgatgaagcaatgaagattcactagaatctatataaatgagagttaagatgaaaactga |
6447066 |
T |
|
| Q |
257 |
taaatcttcaaggatc |
272 |
Q |
| |
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|||||| ||||||||| |
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|
| T |
6447067 |
taaatcatcaaggatc |
6447082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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