View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_71 (Length: 253)
Name: NF6698_low_71
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_71 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 28152696 - 28152435
Alignment:
| Q |
1 |
gctttgatcttgatgcgacttccattgttgttctgtgaatggttgtaaggatacactgtctatccaaatttccacataagtattattactctacatgata |
100 |
Q |
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| T |
28152696 |
gctttgatcttgatgcgacttccattgttgttctgtgaatggttgtaaggatacactgtctatccaaatttccacataagtattattactctacatgata |
28152597 |
T |
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| Q |
101 |
caacattttacagatgtattaaaatttggagaattaatcagtaattaatgaatataatatccttatttatcattcgaataatagtacaaaaatacaatta |
200 |
Q |
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| T |
28152596 |
caacattttacagatgtattataatttggagaattaatcag----taatgaatataatatccttatttatcattcgaataatagtacaaaaatacaatta |
28152501 |
T |
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| Q |
201 |
tgaaga-------------acctcaaaatagagctcagcttcccctgatgtatcttctatgaaacc |
253 |
Q |
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| T |
28152500 |
tgaagaaccatacttaagtacctcaaagtagagctcagcttcccctgatgtatctgctatgaaacc |
28152435 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 95
Target Start/End: Original strand, 8024013 - 8024100
Alignment:
| Q |
8 |
tcttgatgcgacttccattgttgttctgtgaatggttgtaaggatacactgtctatccaaatttccacataagtattattactctaca |
95 |
Q |
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| T |
8024013 |
tcttgatgagatctccattgcttttctgtgaatggttgcaaggatacgttgtcgacccaaatttcgacagaagtattattgctctaca |
8024100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 21544384 - 21544476
Alignment:
| Q |
3 |
tttgatcttgatgcgacttccattgttgttctgtgaatggttgtaaggatacactgtctatccaaatttccacataagtattattactctaca |
95 |
Q |
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|||| |||||||| ||| ||||||||| || |||||| ||||| ||||| | |||| ||||||||||| ||| |||||||||| ||||||| |
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| T |
21544384 |
tttgttcttgatgagacgtccattgtttttttgtgaaaggttgcaaggaaatgttgtcgatccaaatttcaacagaagtattattgctctaca |
21544476 |
T |
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