View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_73 (Length: 247)
Name: NF6698_low_73
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 7 - 223
Target Start/End: Complemental strand, 30615529 - 30615313
Alignment:
| Q |
7 |
gatgtcgaagaatataaacaatttggacttttttcaaaggaatttatgtcgcgtcatggtgtacatttgcttggaacaatgtccacatggtttttccttg |
106 |
Q |
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| T |
30615529 |
gatgttgaagaaaataaacaatttggacttttttcaaaggaatttatgtcgcgtcatggtgtacatttgcttggaacaatgtccacatggtttttccttg |
30615430 |
T |
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| Q |
107 |
atgttgtatttcatagtatgaatcttttccaaaaagatgtcttttgtgccgttggttggattcggtatccgaagacaatgaatgcaattgaagaggttta |
206 |
Q |
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| T |
30615429 |
atgttgtatttcatagtatgaatcttttccaaaaagatgtcttttgtaccgttggttggattcggtatccgaagacaatgaatgcaatggaagaggttta |
30615330 |
T |
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| Q |
207 |
tataattgcgagggcgc |
223 |
Q |
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| T |
30615329 |
tataattgcgaaggcgc |
30615313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 22 - 223
Target Start/End: Complemental strand, 30620268 - 30620067
Alignment:
| Q |
22 |
aaacaatttggacttttttcaaaggaatttatgtcgcgtcatggtgtacatttgcttggaacaatgtccacatggtttttccttgatgttgtatttcata |
121 |
Q |
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||||||||||| |||||||| || || |||||||||||||| ||| | ||| ||||||||||| |||||||||||||| |||||| ||| |||| | | |
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| T |
30620268 |
aaacaatttgggcttttttcgaaagagtttatgtcgcgtcacggtttgcatctgcttggaacagcatccacatggtttttgcttgatattgcattttaca |
30620169 |
T |
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| Q |
122 |
gtatgaatcttttccaaaaagatgtcttttgtgccgttggttggattcggtatccgaagacaatgaatgcaattgaagaggtttatataattgcgagggc |
221 |
Q |
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| T |
30620168 |
gtcagaatcttttccaaaaggatatcttcagtgcaattggttggattccgtctgcaaagacgatgaatgcacttgaagaggtttataaaattgcgagggc |
30620069 |
T |
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| Q |
222 |
gc |
223 |
Q |
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|| |
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| T |
30620068 |
gc |
30620067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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