View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_75 (Length: 245)
Name: NF6698_low_75
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_75 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 245
Target Start/End: Complemental strand, 913749 - 913523
Alignment:
| Q |
17 |
tcagattggacaaaacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaatt |
116 |
Q |
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| T |
913749 |
tcagattggacaaaacaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaagcaaatt |
913652 |
T |
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| Q |
117 |
caacgcacggtgagataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaa |
216 |
Q |
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| T |
913651 |
caacgcacggtgagataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaa |
913552 |
T |
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| Q |
217 |
ctgaaaattcaaaaaccaacagaaattta |
245 |
Q |
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| T |
913551 |
ctgaaaattcaaaaaccaacagaaattta |
913523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 31 - 245
Target Start/End: Original strand, 888681 - 888893
Alignment:
| Q |
31 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaacgcacggtgag |
130 |
Q |
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| T |
888681 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttacttgaat--cattttgtaaacactaaagcaaattcaacgcacggtgag |
888778 |
T |
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| Q |
131 |
ataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
230 |
Q |
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| T |
888779 |
ataaatgcaaataacatgttcttcagattggactcaagttactaccgttataacataagaaaccaaacaaacacttcatctgaaaactgaaaattcaaaa |
888878 |
T |
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| Q |
231 |
accaacagaaattta |
245 |
Q |
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| T |
888879 |
accaacagaaattta |
888893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 1002690 - 1002602
Alignment:
| Q |
31 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttactttcatatcattttgtaaacactaaagcaaattcaac |
120 |
Q |
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| T |
1002690 |
acaagaatttccaaacattt-accttctcaggatcctcatttcacagatttattttcacatcattttgcaaacactaaagcaaattcaac |
1002602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 116 - 209
Target Start/End: Complemental strand, 1002496 - 1002403
Alignment:
| Q |
116 |
tcaacgcacggtgagataaatgcaaataacatgttcttcatattggactcaagttactaccgttataacataagaaaccaaacaaacacttcat |
209 |
Q |
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| T |
1002496 |
tcaatgcacggtgagatgaaagcaaataacatgatcatcagattggacgcgagttactaccgttataatataagaaaccaaacaagcacttcat |
1002403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 163
Target Start/End: Complemental strand, 913786 - 913739
Alignment:
| Q |
116 |
tcaacgcacggtgagataaatgcaaataacatgttcttcatattggac |
163 |
Q |
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| T |
913786 |
tcaacgcacggtgagataaatgcgaataacatgaacttcagattggac |
913739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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