View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6698_low_76 (Length: 244)
Name: NF6698_low_76
Description: NF6698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6698_low_76 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 12 - 244
Target Start/End: Complemental strand, 55120518 - 55120286
Alignment:
| Q |
12 |
gacatcaaacgaaagaattattttaatctaaaccgaataaatgttacaacaagatggaaaaaatcaaacaacaaacagaacaacattgtcacacttagaa |
111 |
Q |
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| T |
55120518 |
gacaccaaacaaaagaattatgttaatctaaaccgaataaatgttgcaacaagacggaaaaaatcaaacaacaaactgaacaacattgtcacacttagaa |
55120419 |
T |
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| Q |
112 |
attaaatctttaattttcgagcatagcctaatctttgattaaatctttccaccattgttctccaaaactcaactctcgagtatagcctaaaactttattt |
211 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55120418 |
attaaatctttaattttcgagcatagcctaatatttgattaaatctttccaccattgttctccaaaactcaactctcgagtatagcctaaaactttattt |
55120319 |
T |
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| Q |
212 |
tacaaagtcaattttcgagcttatagcactaat |
244 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
55120318 |
tacaaagtcaattttcgagcttatagcactaat |
55120286 |
T |
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